BAC Information

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BAC

Clone NameMSMg01-470D07
Chromosome3 (Build37)
Map Location 139,661,687 - 139,661,923
singlet/doubletsinglet
Overlap genenone
Upstream geneRap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D07.T7 (MSMg01no470_d07.b1)MSMg01-470D07.TJ (MSMg01no470_d07.g1)
ACCAG553262AG553263
length753750
length of high quality
(start - end)
240 (79 - 318)250 (79 - 328)
definitionCHROMAT_FILE: MSMg01no470_d07.b1 PHD_FILE: MSMg01no470_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005CHROMAT_FILE: MSMg01no470_d07.g1 PHD_FILE: MSMg01no470_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTCAGAGACACC
GCGGAATTCTATAAGATTTGCCATATGTTAACCTCACAGGTATCTTCTTT
TTCCCACTTGAAAAAAAGCATTCAAAAGACAGTCAAGTAAAATCAGTTGA
ACTACAACCTAGATTTGATGACTAGAGGACAAAGATCTACATTTTAAAAT
TTAGTTATGTTTAGTTAAGTTTAGCTAGTTGCATTTAGTCATGGTCTAGT
GCACATGAAATACTGGAGAAATATTAAGAGAGTTCCAAAATGCAATATAC
TGCAAAAACACAGACCAGTAGCCTTTTTTTTTGAAAGGCAGGAAGATACA
AGTCTTCCTCTGGAGATCTATAATCCATTACTAAAACACAAAACAATAAC
TAGATTTTTAGATATGGTTAAGATTGTACAAGAACAAATAATTCACGTAT
AGAATCCACATGAGCTATGGGAAAGGCAAATTGTTCTATTTGATTGACGA
TTTCAAGAAAGCAAATAATAAAAATGCACTTTTTTATAATTTATTTCTTA
TTACCTATTTTCCTCCATTACATTTCCCATGCTATCCCCCAAGTCCCCCA
TACCCTCCCCCCCCACCTCCCTACCCACTCATTCCCATTTTCTTTGGCCC
TGGCGCTCCCCTGTACTGCCACCTACCCCGTTTTGCGTGCCCCCCTGCGC
CCCCCTCTTTCCCAGCGACGGCCCGACTACCCTCTTCCTCTCCGACACCC
ACG
TTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGTACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATACCC
AGAAGCTGGAAAGAACCTACATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCCCCTATTAAAAACAATG
AATTTATGAAATTCCCACCCAAATGTATGGACCTGTATGTCCTCCTCCCT
GAGTGAGGTAACACCTTTCTCATAGACATCTCCACAATACGTATTCACTG
AATAGCGTGACATTAGCTCTCTTTCCACGACCTTCCCTCATATCCGATAT
ACTTTGTCAAACTCATGGATCCTCAACGAGCACTGGACATTTGTACCGTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d07.b1 MSMg01no470_d07.b1 CHROMAT_FILE:
MSMg01no470_d07.b1 PHD_FILE: MSMg01no470_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:02 2005
         (240 letters)



>mm_chr3_139661487_139662126
          Length = 640

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacctcacaggtatcttctttttcccacttgaaaaaaagcattcaaaagacagtcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taacctcacaggtatcttctttttcccacttgaaaaaaagcattcaaaagacagtcaagt 378

                                                                       
Query: 61  aaaatcagttgaactacaacctagatttgatgactagaggacaaagatctacattttaaa 120
           ||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||
Sbjct: 377 aaaatcagttgaactacaatctagatttgatgactagaaaacaatgatctacattttaaa 318

                                                                       
Query: 121 atttagttatgtttagttaagtttagctagttgcatttagtcatggtctagtgcacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atttagttatgtttagttaagtttagctagttgcatttagtcatggtctagtgcacatga 258

                                                                    
Query: 181 aatactggagaaatattaagagagttccaaaatgcaatatactgcaaaaacacagac 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatactggagaaatattaagagagttccaaaatgcaatatactgcaaaaacacagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)