TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGGTCTGCTCGGTACAAACTCCTCCCCGCCGCTGTAGTTCTTT
CTGCCTGTGATATTGCTAGCGTGCCAGCGTGCTTCAGACTCTGCCCCACA
TGTCTAGGTTTTCTCTTTGAGACAGAAGCTTTGCATGTCCATTTTGCCCC
TGGTGGATTCTCAAATTATCCTTGGTAAGTGCCCTGCTTTTGTTTTCTAG
CTGAGACGCTGCTGAGGGCCACAGAGAGTTCGGCGCTGATGCTACACTCT
AGCAGGACGATGGCATTTATTACCTTTTTCTCCACCTAGCCTCACTGTGC
ACAAATAATTACTTCTAGTACCCTAAGGAACTATCTTTAAATTGTTACCT
AGATATTCCAGAAAAAAATGAATTGGATATTAGAATAGGATTAAGAAATA
TGCATTGCGGTTGGAGGGTATTAGCAATGTTTATTCTGTCCATGTGAGTT
GTAGTGCCTTTCATTGAAATTTCAATAAATAAATAATTTTCTAATAATTA
TTAATAAAGATAATTATATAAAATAAGAAACATTTTGAGAGGCAAAAAAA
CCCCTTCTACTTCATTTAATTAAAGATTTGATAGACATATTATTCTTCCT
ATTCAATACTTTTAATTGGGTTTTTCCTGATTATTCAGAAGAATGCTTCC
CCAGAGGTTTAAACTATATCTCATGCCTCCTATCTGACATTTTTAAN

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTTGTGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG

Query= MSMg01no470_d21.b1 MSMg01no470_d21.b1 CHROMAT_FILE:
MSMg01no470_d21.b1 PHD_FILE: MSMg01no470_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:05 2005
         (597 letters)



>mm_chr3_53137469_53138465
          Length = 997

 Score = 1085 bits (561), Expect = 0.0
 Identities = 588/597 (98%), Gaps = 2/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcctccccgccgctgtagttctttctgcctgtgatattgctagcgtgccagcgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aactcctccccgccgctgtagttctttctgcctgtgatattgctagcgtgccagcgtgct 591

                                                                       
Query: 61  tcagactctgccccacatgtctaggttttctctttgagacagaagctttgcatgtccatt 120
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 590 tcagactctgccccacatgcctaggttttctctttgagacagaacctttgcatgtccatt 531

                                                                       
Query: 121 ttgcccctggtggattctcaaattatccttggtaagtgccctgcttttgttttctagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgcccctggtggattctcaaattatccttggtaagtgccctgcttttgttttctagctg 471

                                                                       
Query: 181 agacgctgctgagggccacagagagttcggcgctgatgctacactctagcaggacgatgg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 470 agacgctgctgagggccacagagagttcgacgctgatgctacactctagcaggacgatgg 411

                                                                       
Query: 241 catttattacctttttctccacctagcctcactgtgcacaaataattacttctagtaccc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 410 catttattacctttttctccacccagcctcactgtgcacaaataattacttctagtaccc 351

                                                                       
Query: 301 taaggaactatctttaaattgttacctagatattccagaaaaaaatgaattggatattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taaggaactatctttaaattgttacctagatattccagaaaaaaatgaattggatattag 291

                                                                       
Query: 361 aataggattaagaaatatgcattgcggttggagggtattagcaatgtttattctgtccat 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cataggattaagaaatatgcattgcggttggagggtattagcaatgtttattctgtccat 231

                                                                       
Query: 421 gtgagttgtagtgcctttcattgaaatttcaataaataaataattttctaataattatta 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtgagttgtagtgcctttcactgaaatttcaataaataaataattttctaataattatta 171

                                                                       
Query: 481 ataaagataattatataaaataagaaacattttgagaggcaaaaaaaccccttctacttc 540
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 170 ataaagataattatat-aaataagaaacattttgagaggcaaaaaaa-cccttctacttc 113

                                                                    
Query: 541 atttaattaaagatttgatagacatattattcttcctattcaatacttttaattggg 597
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 112 atttaattaaagatttgatagacatattattcttcctattcattacttttaattggg 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)