AAATTTGCGGCGCTAAACGACTCCCATATGCACAAATCCGCGGAATTCAT
TTGAGTTACCACCTCTTTGAGGGCTGTTAGNTGCAAAATTCAAAATGACT
ACTCAAAAAGAATAGTGCTAACAAACATGACCTGTTTTCCTCCAAATGCT
TGTTAGTTTTGTACAGATAGATCTATAGATCAGCTGTTCTTCCCTGTTGC
TTCTTAGGTAGCTGTGGGATCAAAAAAAACACGGGGTTCAGGGACAGCTG
TGGATTGATTCTGTGCTCCGTCAAACATCTGCTGTTTTTCTTTCTTTGCA
AATTCTTTGTAATATTTTTTAGAAAAGAGGAAAGTAAGGGCACCATCAGG
AGCATGCAACCCTCTTTTGAGGACTGTAATCCTTCCAGAGCAATCAACTG
AGGGGGAACCACACCAGAATGGAGTCACCAAGGAGGCTGTGACTTCGGAC
TCTTTTCCTGACTCTTTCAACAGAGCAGGTGGACAGTCAAGAGCGGACCG
CGGAACCAGGAAGTGCTTTCGAGAATCGCGGGCTTACCTGCTCATAGTAG
CGGATGTTCTGCTCTGCCGTGTCTGTAAACGCTGACCTGAGGTCATTCTT
CATGTTCTGCTTCCACCGCTCCCAGTCTGCTTTCAGGGCATTATTAGCAC
ATTCCACCTTATCTTCCAGGTTTCCAATTTCCTCTGTAAGCTGAACACCC
CCCGAGAAAGGTAAGCCCATGGGTGTGGTCCCGCTGTGCCCAAGATN

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGCCTGCACCCTTCCATCAGAGACTA
AATTTCTAGTACCTGACCTGGGTCACTCACCTCTACACAGATGTGTATCC
AAAAGATCCTTTTTTGCACAATCTCAGTTACTTTGTTTTTTGACCAAACC
ATTTCTCAGGAAAATGGGAAAGTGTCTGTTGAAACTGGAAGTCAAAGGAA
AACTACTGTTTATATTGAGCTCATCCATGTGCCTTTGGGATTAACTCCCT
AACCCAAGAATTAAATTAATTATGGAGTCTGTTATAATTTCAAATCGTCA
ACCTTTCTTTCTTCAGTGTCATCCTACAAGTATTCAATCCCAATTCCGTG
GCAATGCTCAAAACTCAGCATATTTTACCTTCTGGGGAGTAAGAGGTTCT
TATAAATCTGTCTCATCTAATGTCAGGAAATGTTTATGAAATATTAAAAC
TGGAATGTACAAAGAACCTCATTACAATCAAAAGGGCTGTGTCAGGAATC
CTTTGTGTGTCACCTCACTGGCTGACCTCAGTCTCCTGAGGACACTCCAG
ATCCTTCTGGAAGTGCACACGGACTGCTAAGAACACAGCCTCCCTTTCTA
ATGAATTTCATTCTTGGATCCATAATTATGATAATTTAAAGATATAGGTC
GGAATTTTAAAACATAATTACTCCTACCCTATTTTCAGCTTTCCTCTTGT
TG

Query= MSMg01no470_e18.b1 MSMg01no470_e18.b1 CHROMAT_FILE:
MSMg01no470_e18.b1 PHD_FILE: MSMg01no470_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:09 2005
         (292 letters)



>mm_chr3_117503343_117504034
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaagaggaaagtaagggcaccatcaggagcatgcaaccctcttttgaggactgtaatc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 gaaaagaggaaagtaagggcaccatcaggagcatgcaaccctctgttgaggactgtaatc 260

                                                                       
Query: 61  cttccagagcaatcaactgagggggaaccacaccagaatggagtcaccaaggaggctgtg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cttccagagcaatcaacagagggggaaccacaccagaatggagtcaccaaggaggctatg 320

                                                                       
Query: 121 acttcggactcttttcctgactctttcaacagagcaggtggacagtcaagagcggaccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcggactcttttcctgactctttcaacagagcaggtggacagtcaagagcggaccgc 380

                                                                       
Query: 181 ggaaccaggaagtgctttcgagaatcgcgggcttacctgctcatagtagcggatgttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaccaggaagtgctttcgagaatcgcgggcttacctgctcatagtagcggatgttctg 440

                                                               
Query: 241 ctctgccgtgtctgtaaacgctgacctgaggtcattcttcatgttctgcttc 292
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 441 ctctgccgtgtctgtaaatgctgacctgaggtcatttttcatgttctgcttc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_e18.g1 MSMg01no470_e18.g1 CHROMAT_FILE:
MSMg01no470_e18.g1 PHD_FILE: MSMg01no470_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:09 2005
         (559 letters)



>mm_chr3_117668607_117669565
          Length = 959

 Score =  996 bits (515), Expect = 0.0
 Identities = 548/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcctgcacccttccatcagagactaaatttctagtacctgacctgggtcactcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catgcctgcacccttccatcagagactaaatttctagtacctgacctgggtcactcacct 700

                                                                       
Query: 61  ctacacagatgtgtatccaaaagatccttttttgcacaatctcagttactttgttttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctacacagatgtgtatccaaaagatccttttttgcacaatctcagttactttgttttttg 640

                                                                       
Query: 121 accaaaccatttctcaggaaaatgggaaagtgtctgttgaaactggaagtcaaaggaaaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acaaaaccatttctcaggaaaatgggaaagtgtctgttgaaactggaagtcaaaggaaaa 580

                                                                       
Query: 181 ctactgtttatattgagctcatccatgtgcctttgggattaactccctaacccaagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctactgtttatattgagctcatccatgtgcctttgggattaactccctaacccaagaatt 520

                                                                       
Query: 241 aaattaattatggagtctgttataatttcaaatcgtcaacctttctttcttcagtgtcat 300
           | |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 519 acattaaacatggagtctgttataatttcaaatcatcaacctttctttcttcagtgtcat 460

                                                                       
Query: 301 cctacaagtattcaatcccaattccgtggcaatgctcaaaactcagcatattttaccttc 360
           ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 459 cctacaaatattcaatcccaattcaggggcaatgctcaaaactcagcatattttaccttc 400

                                                                       
Query: 361 tggggagtaagaggttcttataaatctgtctcatctaatgtcaggaaatgtttatgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tggggagtaagaggttcttataaatctgtctcatctaatgtcaggaaatgtttatgaaat 340

                                                                       
Query: 421 attaaaactggaatgtacaaagaacctcattacaatcaaaagggctgtgtcaggaatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attaaaactggaatgtacaaagaacctcattacaatcaaaagggctgtgtcaggaatcct 280

                                                                       
Query: 481 ttgtgtgtcacctcactggctgacctcagtctcctgaggacactccagatccttctggaa 540
           |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||
Sbjct: 279 ttgtgtgtcacctcactgactgaccccagtctcctgaggacactgcagatccttctggaa 220

                              
Query: 541 gtgcacacggactgctaag 559
           |||||||||||||||||||
Sbjct: 219 gtgcacacggactgctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)