BAC Information

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BAC

Clone NameMSMg01-470G07
Chromosome3 (Build37)
Map Location 49,190,742 - 49,190,977
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
Downstream geneLOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470G07.T7 (MSMg01no470_g07.b1)MSMg01-470G07.TJ (MSMg01no470_g07.g1)
ACCAG553406AG553407
length738847
length of high quality
(start - end)
236 (77 - 312)172 (76 - 247)
definitionCHROMAT_FILE: MSMg01no470_g07.b1 PHD_FILE: MSMg01no470_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:17 2005CHROMAT_FILE: MSMg01no470_g07.g1 PHD_FILE: MSMg01no470_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTCTAAATTTGCGTGCGCTAAAAGAATCACTNAGTACGCACCGGCGCGG
AATTCCCACCATTTCCCAAACACCAGTCCACCTGTTAGGGGCTCTACCTC
AGTCACTCTTGAGAATGAAATGCCATAGGCTTCATGTGATTTCGTGGTGA
CTGCCAAGTTGTCAGCCTAGGGAAATACCACATAGATGCATTGAAATCTT
TCCATTTTTACTGCCTTCCTACCCAATCCTTTCCCATTTCACTCTGTGGT
TTTTATATTTTATTTCTAAGTCATGTTCTGACTTTATATCACTTGGCTGG
CCTTTTAGCCCAGTCTAGTCNTGTACTCATGGTAATCCTACTTCATCCTC
CAAGAATGTTTACACTACCATGCATGGGTCCATTTGAGTATATTTCAAAT
CTCTTAGCGCTCCATACAAGCCAAGCTAACTAACTAGATAATAGCTACGG
TAACTTCTATGGAAAGAGGACAGAGAGAGAACATAGTTCTAGAAATAACT
ATCAACAATTCTCTTCTGACGCCCTTTACAGCACCTCATGATGCACGACT
TTCTGCATTCGCTCTTCCAGGATAGGAGATACTTATCATACCCCCTCACG
CCCGCTTCCCAGGACTCATTAATCCTGCTGCTAACCCTCGCCATTTCTTT
TATTTACCTTCCACTTCTCCCGCAACGCATCCCACCCCCCACCTTTACTC
GCCCTTTACTTTTATCCCCTCTTGCTTAACCTTTCCCG
NTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGCCTGTAATAAGGTTGTTGGGC
TCTGGTGGACACATATTGCCATAGCTGTTATTGATTTTGTTCTTACCCTG
GCATCTAGGCATCTGGGTTTGGAGTGACTAGATGCTGACTTCTGGTTTTT
TGTTTTTTGGGTGATGTTTTTGTTTCATGGTTTCTGTTTCCTCTTTAGAC
TGTTTTAAACATGTTGCCTGCGCGTTGCCTGATTGGTCTGCTCTTCTAGC
ACGCTCAAGGATAATCTTTTTTTGTTTTCTCCCACTGATGCTACACAAGA
CGCCCCGATTTTTTTGCTCCATTTATACCCCCGCTGTTTCACTCCTTATT
TCTTGTCATGTAGCACACACCGCACCCCATTTATTTACGTTCTTTTGTTT
TTCCCTATCCTTCCTTTTTTTTCCCACTTTGCGTCTCCCACTTATTCCCC
TTTTTTCCCTCTTTCTCCCTCTTCCTCTTTTCTCTTTCTGTTCCTTTATT
CTCCCCCCTTCCTTTTCCCTCTCACCCCTTTTTTCTTCTCCTTTCTTTCC
CCCCTTTTTTTCTCTCCGCCACCCCCATTTTCTTTCTCCCCCCTCTTCCT
CCTTTTTCTCCTCCTTTCTCCCCTCTTTTCCTCCTTCTTTCCTCTCCTCC
CCTTTTTCTCTTCCTCCCCACTTTCCCCGCTCTTCCCTCTCTTTTTTCTT
CCTCTTTTTCTTCCCTCCTTTTTTCACCTCTTCTCTTTTCTTTTCCCCCT
TTCTTTTTCTTCTTCCTCCTCTTTTTTTTCTTTTCCCTCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_g07.b1 MSMg01no470_g07.b1 CHROMAT_FILE:
MSMg01no470_g07.b1 PHD_FILE: MSMg01no470_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:17 2005
         (236 letters)



>mm_chr3_49190542_49191177
          Length = 636

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacctgttaggggctctacctcagtcactcttgagaatgaaatgccataggcttcatg 60
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tccacctgttaggtgctctacctcagtcactcttgagaatgaaatggcataggcttcatg 260

                                                                       
Query: 61  tgatttcgtggtgactgccaagttgtcagcctagggaaataccacatagatgcattgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttcgtggtgactgccaagttgtcagcctagggaaataccacatagatgcattgaaa 320

                                                                       
Query: 121 tctttccatttttactgccttcctacccaatcctttcccatttcactctgtggtttttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 321 tctttccatttttactgccttcctacccaatcctttcccatttcactctgtggccattat 380

                                                                   
Query: 181 attttatttctaagtcatgttctgactttatatcacttggctggccttttagccca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttatttctaagtcatgttctgactttatatcacttggctggccttttagccca 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)