BAC Information

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BAC

Clone NameMSMg01-470N03
Chromosome3 (Build37)
Map Location 155,400,055 - 155,400,344
singlet/doubletsinglet
Overlap genenone
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470N03.T7 (MSMg01no470_n03.b1)MSMg01-470N03.TJ (MSMg01no470_n03.g1)
ACCAG553733AG553734
length776759
length of high quality
(start - end)
251 (72 - 322)290 (79 - 368)
definitionCHROMAT_FILE: MSMg01no470_n03.b1 PHD_FILE: MSMg01no470_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:51 2005CHROMAT_FILE: MSMg01no470_n03.g1 PHD_FILE: MSMg01no470_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCTCTTTAGTGACAGTTATGCTAAGTTCTGGTTCCAGCACAT
CTTGGATCGATGACAAAGTGTAGGTTAGTGGATTTGTGGATGAGTTGGCG
TCCAATCCCTCCACCTAATGTCTTTCTGGTTACAGAGGGTGGTTGGTTCA
GGCTCCATGATCTATATAATCAGAAGTGAATGCTAATCTAATACTTGTAG
ATTCAATGGAGTTTCCACTGCAGTAGATTTCTACTTCTCTCCAGAAATGT
TCCCCTTCTTCAATTTCTGTTTTTTATTGTAGCATTTCTTCCCTCCACCT
GATCCCTTCTGTGGTATGTACTCCCTTATAAGTGGATATTAGCCCAAACT
ACAGATTACCCCAATACCCTAACAAGTTAAACACGAAGGAAGGTCCAAGT
GAGAATGCTTCCATTCCTCTTACAAAGGGGAACAAAATAATCATGGCCGG
AACACGGAGCGACTTGCGTGGTAGAGACGCAGCCTATCTCACCTCCCCCC
TCCCTTTTCTCCCTCTCCCCCCCCCCCCCTCTACCTCCTCCCTCTCCCCT
CCTTCCCCCCCCCCCCCCCCCCCCCTCTTTCCCTCCTCCTCTCCCCCCCC
CCCCTTTCCTCCCTTCTCCCCTTTCTCTCCTCCTCCCCCTCCATCCTTCC
CCCCCCCTCTTTCTTCCCCACTCCTCCTCCTCTCTCTCCTCTTCTCCCCC
TCTCCTCTCCCTCCTTCCCCCATCCN
CCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAAGAGCATGTCCATAATC
TTTTGTCTAATAATTCAGGGCAAACAGTGCACAGGTCACAGCAAGGATGA
GACTGAATGAGAGGACACTTGGGAAAATTTAAGAGAATGTAGAGTTTGTT
GAAGACACACTTCAAAAGTATTCTTCCTTTGGTAAAAATTGTTTAGAGTA
TTCATCAATAAACTCAGAGAAAAAATTGCTCTGTCTATGTTGCTGAACCA
AAAGAAGGTCTGCCGGAGAGGAAACAATGTATTGACTCCACACACTCACT
TTTTAGTAGAGAAGAGACATTAGTCTGCATTATGGTGATGTGAGACCTAA
ATGAATTTCATTTTGTGGACAAGATTAGAAGAGAGCAATGTAATTTGAAA
ACATACATTACTTATGTGAACTTTTATAATACAATGCTGTCAGTATTTCC
AGAACATGAGATGTTTCTTTGCTTTTAGGCAATTACCTACCAGAGCGAAT
ATAATCAGTGAATATTACTCCTTTTAAGCCCTATTTTGTGTTGTCTACCA
CGGCAATTTTATATTCCACCCCTATATATGCACCTCTATTTAAAGCATGC
ATTCTCTACCAATCTTGATTTGCATCACCTGACACCACTATCGCTCTCTT
GGCACTTCCCTTTTGCCCACATTACCTTCCTCTTCCCCCGGTTGTCTATC
CCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_n03.g1 MSMg01no470_n03.g1 CHROMAT_FILE:
MSMg01no470_n03.g1 PHD_FILE: MSMg01no470_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:51 2005
         (290 letters)



>mm_chr3_155399855_155400544
          Length = 690

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%), Gaps = 2/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaaagagcatgtccataatcttttgtctaataattcagggcaaacagtgcacaggtca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagagagcatgtccataatcttttgtctaataattcagggcaaacagtgcacaggtca 260

                                                                       
Query: 61  cagcaaggatgagactgaatgagaggacacttgggaaaatttaagagaatgtagagtttg 120
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 261 cagcaaggatgagactgaatgagagaacatttgggaaaatttaagagaatgtagagtttg 320

                                                                       
Query: 121 ttgaagacacacttcaaaagta-ttcttcctttggtaaaaattgtttagagtattcatca 179
           ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaagacatacttcaaaag-agttcttcctttggtaaaaattgtttagagtattcatca 379

                                                                       
Query: 180 ataaactcagagaaaaaattgctctgtctatgttgctgaaccaaaagaaggtctgccgga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 ataaactcagagaaaaaattgctctgtctatgttgctgaaccaaaagaaggtctgccaga 439

                                                              
Query: 240 gaggaaacaatgtattgactccacacactcactttttagtagagaagagac 290
           |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaggaaacaatgcattgactccacacactcactttttagtagagaagagac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)