BAC Information

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BAC

Clone NameMSMg01-471E09
Chromosome3 (Build37)
Map Location 94,258,297 - 94,258,912
singlet/doubletsinglet
Overlap genenone
Upstream geneTchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403
Downstream gene2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E09.T7 (MSMg01no471_e09.b1)MSMg01-471E09.TJ (MSMg01no471_e09.g1)
ACCAG554079AG554080
length754767
length of high quality
(start - end)		667 (74 - 740)528 (80 - 607)
definitionCHROMAT_FILE: MSMg01no471_e09.b1 PHD_FILE: MSMg01no471_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:28 2005CHROMAT_FILE: MSMg01no471_e09.g1 PHD_FILE: MSMg01no471_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAAGAGGATCCG
CGGAATTCCTCTTTTTCGAAAAGTTCTGTAGTAGAGGCTGAGGCATCCCT
TCAGAACCTACCTTCAGGACTTGTCCAGGAGCCAACTCCATGTGCCGCTG
AACCTTTGGTGCCTGGTTGTTCCAGCTGGGCCCTTTCCAGGACTGCCCAA
GCCCCATGTGGAGACTCACGACCATCGGTAATCCCAGTTCTGCCGAATCC
TATGCCCTCTTTTATCCTAAGTAGGCACGCATGTAGTACAGACATACATG
CAGGCAAAATACCCCAAAATTTTTCCCCCCAGCTCTAGTGCTGGGCAGAT
TTTAAAAGCAGGAGCACTGGTAGATTCACCAGCGGCCAGGATCCCACAGC
AAGGGAAGCCGAACTGCTGAGTGTTAATCAGTCACTTTACTTAGGTTGTT
ACAGCACTCACTAGGACTGCCTGGGAAAGGGGATGGCAGTGGAGAAAAAT
AAATCAGGCTTGAGAAATGTATCAGGTTTCATAAAGGATGTGGCTGGAGG
TAATCAATGCACCAGAGAAAGACAATAAAAGCTAAGGGTGATTGATCACC
AAGTAAAAGCTAAGTGTACAAGGTCCTCAGGTTATAAAGGCAAATCTGCA
AGGCAGGGAGGGCTGCATACGGAACTCTGTCCCTAACCTCAGGAAGGCAC
CCAGAGGTGCTTTGGATCAAATCTCCTCTCATCCTTCGGGCCTGCAAAAG
TGAT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAAAAAGGCC
AGCTGGGATGCCCCCAAAACATGGGGACTAAGACTGTATCGATCCACAGG
GACCGACCCGGTGACCCTGTTCTCTTTGACCCGCCAGGTCCTCAATGTAG
GACCCCGCGTCCCCATTGGGCCTAATCCCGTGATCACTGAACAGCTACCC
CCCTCCCAACCCGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCC
TTCAGGCGCGGCCTCTATGGTGCCTGGGGCTCCCCCGCCTTCTCAGCAGC
CTGGGACGGGAGACAGGCTGCTAAACCTGGTAGAAGGAGCCTACCAAGCA
CTCAACCTCACCAGTCCCGACAAAACCCAAGAGTGCTGGCTGTGTCTGGT
ATCGGGACCCCCCTACTACGAAGGGGTGGCCGTCCTAGGTACTTACTCCA
ACCATACCTCTGCCCCGGCTAACTGCTCCGTGACCTCCCAACACAAGCTG
ACCCTGTCCGAAGTGACCGGGCAGGGACTCTGCGTAGGAGCAGTTCCCAA
AACCCATCAGGCCCTGTGTAATACCACCCAGAAGACGAGCGACGGGGCCT
ACTATTTGGCCTCTCCCGCCGGGAACCATTGGGCTTGCAGCACCGGGGTC
ACTCCCTGGCTATCTACTACTGTGCTTAACTTAACCACCATTACTGGGTC
CTGTTTGAGCTCTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e09.b1 MSMg01no471_e09.b1 CHROMAT_FILE:
MSMg01no471_e09.b1 PHD_FILE: MSMg01no471_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:28 2005
         (667 letters)



>mm_chr3_94257846_94258912
          Length = 1067

 Score = 1145 bits (592), Expect = 0.0
 Identities = 609/620 (98%), Gaps = 10/620 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   aggagccaactccatgtgccgctgaacctttggtgcctggttgttccagctgggcccttt 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 aggagccaactccatgtgccgctgaacctttggtgcctggttgttccagctgggcccttt 1008

                                                                        
Query: 114  ccaggactgcccaagccccatgtggagactcacgaccatcggtaatcccagttctgccga 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 ccaggactgcccaagccccatgtggagactcacgaccatcggtaatcccagttctgccga 948

                                                                        
Query: 174  atcctatgccctcttttatcctaagtaggcacgcatgtagtacagacatacatgcaggca 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  atcctatgccctcttttatcctaagtaggcacgcatgtagtacagacatacatgcaggca 888

                                                                        
Query: 234  aaataccccaaaattttt------ccccccagctctagtgctgggcagattttaaaagca 287
            |||||||||||||    |      ||||||||||||||||||||||||||||||||||||
Sbjct: 887  aaataccccaaaa----tacccccccccccagctctagtgctgggcagattttaaaagca 832

                                                                        
Query: 288  ggagcactggtagattcaccagcggccaggatcccacagcaagggaagccgaactgctga 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  ggagcactggtagattcaccagcggccaggatcccacagcaagggaagccgaactgctga 772

                                                                        
Query: 348  gtgttaatcagtcactttacttaggttgttacagcactcactaggactgcctgggaaagg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  gtgttaatcagtcactttacttaggttgttacagcactcactaggactgcctgggaaagg 712

                                                                        
Query: 408  ggatggcagtggagaaaaataaatcaggcttgagaaatgtatcaggtttcataaaggatg 467
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 711  ggatggcagtggagaaaaataaatcaggcttgagaaatgtatcaggtttcataaaggagg 652

                                                                        
Query: 468  tggctggaggtaatcaatgcaccagagaaagacaataaaagctaagggtgattgatcacc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  tggctggaggtaatcaatgcaccagagaaagacaataaaagctaagggtgattgatcacc 592

                                                                        
Query: 528  aagtaaaagctaagtgtacaaggtcctcaggttataaaggcaaatctgcaaggcagggag 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  aagtaaaagctaagtgtacaaggtcctcaggttataaaggcaaatctgcaaggcagggag 532

                                                                        
Query: 588  ggctgcatacggaactctgtccctaacctcaggaaggcacccagaggtgctttggatcaa 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  ggctgcatacggaactctgtccctaacctcaggaaggcacccagaggtgctttggatcaa 472

                                
Query: 648  atctcctctcatccttcggg 667
            ||||||||||||||||||||
Sbjct: 471  atctcctctcatccttcggg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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