ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTATTCGCCAGGTTCTTGTGTTAGTTAATAAATTAGGACA
AGAGCAATATGTTTATTCACATATTTAAAGGGGGTAATTTTTCTAAAAAA
TAGCTATTAAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGAA
CCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAC
ATGATATGTTCTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATAA
CCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAATGA
AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACAC
CCATGTAAGGAGTTACAGAGACAAAATTTGGAGCTGAGACAAAAGGATGG
ACCATCTAGAGACTGCCATATCTGGGGATCCATCCCATAATCAGCCGCCA
AATGCAGATACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTG
ATATAGCTGTCTCTTGTGAGGCTATGCCTGGGCCTAGCAAACACAGAAGT
GGATGTTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGAA
GCTAGAGAAAGTACCCAAGGAGCTAAAGGCGTCTGCAACCCTATGGGTGG
AACAACAATATGAACTAACCAGTACCTCCCGGAGCTTGTGTCTCTAGCTG
CATATGN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAGGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGAAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAGAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG
CCCCTCCTTAGATTTG

Query= MSMg01no471_g13.b1 MSMg01no471_g13.b1 CHROMAT_FILE:
MSMg01no471_g13.b1 PHD_FILE: MSMg01no471_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:39 2005
         (684 letters)



>mm_chr3_113495442_113496525
          Length = 1084

 Score = 1265 bits (654), Expect = 0.0
 Identities = 675/682 (98%), Gaps = 2/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgtattcgccaggttcttgtgttagttaataaattaggacaagagcaatat 63
           ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtataagccaggttcttgcgttagttaataaattaggacaagagcaatat 263

                                                                       
Query: 64  gtttattcacatatttaaagggggtaatttttctaaaaaatagctattaaaaaagaatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttattcacatatttaaagggggtaatttttctaaaaaatagctattaaaaaagaatga 323

                                                                       
Query: 124 atttatgaaattcctaggcaaatggatgaacctggagggcatcatcctgagtgaggtaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttatgaaattcctaggcaaatggatgaacctggagggcatcatcctgagtgaggtaac 383

                                                                       
Query: 184 ccaatcacaaaagaactcacatgatatgttctcactgataagtggatattagcccagaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaatcacaaaagaactcacatgatatgttctcactgataagtggatattagcccagaaa 443

                                                                       
Query: 244 cttagaataaccaagatataagatacaatttgctaaacacatgaaactcaagaagaatga 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 cttagaataaccaagatataagatacaatttgcaaaacacatgaaactcaagaagaatga 503

                                                                       
Query: 304 agaccaaagtgtggacactttgccccttcttagaattgggaacaaaacacccatgtaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaccaaagtgtggacactttgccccttcttagaattgggaacaaaacacccatgtaagg 563

                                                                       
Query: 364 agttacagagacaaaatttggagctgagacaaaaggatggaccatctagagactgccata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agttacagagacaaaatttggagctgagacaaaaggatggaccatctagagactgccata 623

                                                                       
Query: 424 tctggggatccatcccataatcagccgccaaatgcagataccattgcatacactagcaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctggggatccatcccataatcagccgccaaatgcagataccattgcatacactagcaag 683

                                                                       
Query: 484 attttgctgaaaggaccctgatatagctgtctcttgtgaggctatgcctgggcctagcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attttgctgaaaggaccctgatatagctgtctcttgtgaggctatgcctgggcctagcaa 743

                                                                       
Query: 544 acacagaagtggatgttcacagtcagctattggatggatcacagggcccccaatggagaa 603
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 744 acacagaagtggatgttcacagtcagctattggatgaatcacagggcccccaatggagaa 803

                                                                       
Query: 604 gctagagaaagtacccaaggagctaaaggcg-tctgcaaccctatgggtggaacaacaat 662
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 804 gctagagaaagtacccaaggagctaaagg-gatctgcaaccctatgggtggaacaacaat 862

                                 
Query: 663 atgaactaaccagtacctcccg 684
           ||||||||||||||||||||||
Sbjct: 863 atgaactaaccagtacctcccg 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)