Query= MSMg01no471_j05.b1 MSMg01no471_j05.b1 CHROMAT_FILE:
MSMg01no471_j05.b1 PHD_FILE: MSMg01no471_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:52 2005
(614 letters)
>mm_chr3_43138104_43139117
Length = 1014
Score = 1069 bits (553), Expect = 0.0
Identities = 577/587 (98%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 1 gtagaccagcttttaaaagctcatacctaaaggaagttattcattttacaaagaaactgt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtagaccagcttttaaaagctcacacctaaaggaagttattcattttacaaagaaactgt 524
Query: 61 gagaatgcttaagagttcctaccaatgtctgtacagagtccataactagaatggtactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 523 gagaatgcttaagagttcctaccaatgtctgtacagagtccataactagaatggtcctgt 464
Query: 121 taggctgcatgatttttacctatactatttaagaggaaatgtagctacagttatttttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taggctgcatgatttttacctatactatttaagaggaaatgtagctacagttatttttta 404
Query: 181 attttgtaattcatttagtttgaagtattgataacctactgcttttatactaattgcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 attttgtaattcatttagtttgaagtattgataacctactgcttttatactaattgcttg 344
Query: 241 tctgtcttagaaattataggtacaaactatctggagcatatttttgaattaacttttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tctgtcttagaaattataggtacaaactatctggagcatatttttgaattaacttttttg 284
Query: 301 cagtaacaagtttatagacattgtattaatgatgtacgcattgaataatttggctacatc 360
|||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 283 cagtaacaagtttatagaaattgtattaatgatgtacacattggataatttggctacatc 224
Query: 361 acatggaaaagaattctgcaatggtttttgtttttgtttttgtttttttgtttgtttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 acatggaaaagaattctgcaatggtttttgtttttgtttttgtttttttgtttgtttgtt 164
Query: 421 tgtttttgttttttgtttttttaaggtggtggaaacctgcattcaaactgaaggcacaca 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 t----ttgttttttgtttttttaaggtggtggaaacctgcattcaaactgaaggcacaca 108
Query: 481 accacacaacgttgaaaaatcttccaaccctgtccaataagaacaaaaaattctgatgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 accacacaacgttgaaaaatcttccaaccctgtccaataagaacaaaaaattctgatgta 48
Query: 541 cagcgtcagtgaagaaaaacttgtttatttgtttttgggtttttttt 587
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 cagcatcagtgaagaaaaacttgtttatttgtttttgggtttttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_j05.g1 MSMg01no471_j05.g1 CHROMAT_FILE:
MSMg01no471_j05.g1 PHD_FILE: MSMg01no471_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:52 2005
(236 letters)
>mm_chr3_43090958_43091589
Length = 632
Score = 429 bits (222), Expect = e-125
Identities = 232/236 (98%), Gaps = 4/236 (1%)
Strand = Plus / Plus
Query: 1 cgttactataggcatgtacaactagctgaacttgaaactctaattcatagttttatatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttactataggcatgtacaactagctgaacttgaaactctaattcatagttttatatgt 260
Query: 61 ttttaaatcatatcatgtactgaattcaaagcctcataaagcctcttttataggcataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaatcatatcatgtactgaattcaaagcctcataaagcctcttttataggcataaa 320
Query: 121 cagaaaaatagtggggataacataggttttaaattcaaagtngagttcatagcatcatag 180
|||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagaaa--tagtggg-ataacataggttttaaattcaaagt-gagttcatagcatcatag 376
Query: 181 tctgatttagggtaaattcatttataattggataaataactgtgagcttcttgtgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctgatttagggtaaattcatttataattggataaataactgtgagcttcttgtgt 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 632
Length adjustment: 9
Effective length of query: 227
Effective length of database: 623
Effective search space: 141421
Effective search space used: 141421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
