Query= MSMg01no471_j10.b1 MSMg01no471_j10.b1 CHROMAT_FILE:
MSMg01no471_j10.b1 PHD_FILE: MSMg01no471_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:53 2005
(662 letters)
>mm_chr3_54153971_54155031
Length = 1061
Score = 1212 bits (627), Expect = 0.0
Identities = 657/679 (96%), Gaps = 21/679 (3%)
Strand = Plus / Minus
Query: 1 agggggagctggacaatatctgattttcagctttgtcaggcatggtggttgacctgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agggggagctggacaatatctgattttcagctttgtcaggcatggtggttgacctgaaac 630
Query: 61 aaccatcactcgaacgcaccaaaaataacagttaaaacgtctcgtgttctttcttgttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaccatcactcgaacgcaccaaaaataacagttaaaacgtctcgtgttctttcttgttca 570
Query: 121 agatggagtgaactgtgaataaaagtttgtcttacactgggaagcaggtaggtagtagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agatggagtgaactgtgaataaaagtttgtcttacactgggaagcaggtaggtagtagca 510
Query: 181 gatggctaacgatttagctgttgggatagaacagctgtgtggaaagaaaagcagagaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gatggctaacgatttagctgttgggatagaacagctgtgtggaaagaaaagcagagaggt 450
Query: 241 gctgcta---ttttctatccaagagcacagctctagagcaactctgaaaactcagagttg 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gctgctaaag----ctatccaagagcacagctctagagcaactctgaaaactcagagttg 394
Query: 298 tacaggaggaaaggcaggttgaatgagagaggagacaaataagtttgcttggaaaactga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tacaggaggaaaggcaggttgaatgagagaggagacaaataagtttgcttggaaaactga 334
Query: 358 cagattattttagtgtatttcatgtaagagaaaaagaccttggtgctgatatgattatta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagattattttagtgtatttcatgtaagagaaaaagaccttggtgctgatatgattatta 274
Query: 418 tgaaaatgtattaagatgctgggcagtaattttcccagtttatctataaatacatggaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgaaaatgtattaagatgctgggcagtaattttcccagtttatctataaatacatggaaa 214
Query: 478 ttaaagttttagtggctagagagatagctcagtggttaagagcactggctgtttttgcag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttaaagttttagtggctagagagatagctcagtggttaagagcactggctgtttttgcag 154
Query: 538 aggatctgaattttgatttcatatttgggtggttcacaattgcctgtggggattctaacc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aggatctgaattttgatttcatatttgggtggttcacaattgcctgtggggattctaacc 94
Query: 598 ccatttctagcctctataggcattcacacacacacacacaca--------------aaac 643
||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 93 ccatttctagcctctgtaggcattcacacacacacacacacacacacacacacacaaaac 34
Query: 644 tgtacaaattttaaagttc 662
|||||||||||||||||||
Sbjct: 33 tgtacaaattttaaagttc 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_j10.g1 MSMg01no471_j10.g1 CHROMAT_FILE:
MSMg01no471_j10.g1 PHD_FILE: MSMg01no471_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:53 2005
(548 letters)
>mm_chr3_53996647_53997594
Length = 948
Score = 760 bits (393), Expect = 0.0
Identities = 491/555 (88%), Gaps = 53/555 (9%)
Strand = Plus / Plus
Query: 1 atgatgaataatctggaggccaaaggttgaaacttaattatctgaacactgaactcacca 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 201 atgatgaataatctggaggccaaaggttgaaacttaattatatgatcactgaactcacca 260
Query: 61 atagaaagacgctttagctaaacaatttagtttctcaagttgaaagctattaagcatggt 120
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 261 atagaaagacgctttaactaaacaaattagtttctcaagttgaaagctattaaacatggt 320
Query: 121 cat--ttgggagtggagagatggatcagcagttaaaagtgcttcctactcttccagagga 178
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatttgggagtggagagatggatcagcagttaaaagtgcttcctactcttccagagga 380
Query: 179 cgc-gaattcagttcccaggacccatagggtgtgtgtgtgtgacacacaaacactcataa 237
| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 381 c-ctgaattcagttcccaggacccatagggtgtatgtgtgtaacacacaaacactcataa 439
Query: 238 ctctaggtccgactctgtaggcacatatgctcttgagcacataaccacacacagacatgc 297
| |||||||||||||||
Sbjct: 440 c--------------------------------------------cacacacagacatgc 455
Query: 298 acatatacagaaaattaaaaactaaaatataaatcttttaaaatatggtcacattttgtt 357
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 456 acatatacaaaaaattaaaaactaaaatataaatcttttaaaatatggtcacattt-gtt 514
Query: 358 agtgcaaagtctgtttaatctacagttaaagcactctacatatccggctcacttactcag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agtgcaaagtctgtttaatctacagttaaagcactctacatatccggctcacttactcag 574
Query: 418 acatccattaggcttacaaacaccaattaataggaatatgcaagtggtttataggacccc 477
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acatccattgggcttacaaacaccaattaataggaatatgcaagtggtttataggaccca 634
Query: 478 tttattttagttttagacactatagacatagaccctcatgttttcagtgaatagttgaa- 536
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 635 tttattttagttttagacactatagacatagaccctcatgtttccagtgaatagttgaag 694
Query: 537 ---tagatatgagat 548
||||||||||||
Sbjct: 695 taatagatatgagat 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
