Query= MSMg01no472_a21.b1 MSMg01no472_a21.b1 CHROMAT_FILE:
MSMg01no472_a21.b1 PHD_FILE: MSMg01no472_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:33 2005
(460 letters)
>mm_chr3_52587366_52588226
Length = 861
Score = 884 bits (457), Expect = 0.0
Identities = 460/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 catgtagactggaactcagctaaacgtaaccccttggaagcacagttgagaagcaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtagactggaactcagctaaacgtaaccccttggaagcacagttgagaagcaccaag 260
Query: 61 acatgttgcttctgaggaggatcctagaaaattgtaggacagtatttataccttaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgttgcttctgaggaggatcctagaaaattgtaggacagtatttataccttaaaaaa 320
Query: 121 aa-cacccttcttaaaatgtctagaggcatcttatacaaaatataggagtaccacaaaag 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcacccttcttaaaatgtctagaggcatcttatacaaaatataggagtaccacaaaag 380
Query: 180 gaactggatttggacgtgttcatactttgtaagtgacggatgcagagggagacaaatttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactggatttggacgtgttcatactttgtaagtgacggatgcagagggagacaaatttt 440
Query: 240 tactttattttctgcatatttttaaattactattatttgtagaatatgctttaaataatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttattttctgcatatttttaaattactattatttgtagaatatgctttaaataatg 500
Query: 300 aaaaaggtataagtataatgatataacctttaaagctaaatactacaagctgccctcgta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaggtataagtataatgatataacctttaaagctaaatactacaagctgccctcgta 560
Query: 360 gtctgtatagctctgagttattaatgtagctatttagcatctcctaacaggaagacagtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctgtatagctctgagttattaatgtagctatttagcatctcctaacaggaagacagtc 620
Query: 420 atgtatacaatagaaaccaggcaccacatagcaatttcttt 460
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtatacaatagaaaccaggcaccacatagcaatttcttt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_a21.g1 MSMg01no472_a21.g1 CHROMAT_FILE:
MSMg01no472_a21.g1 PHD_FILE: MSMg01no472_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:33 2005
(405 letters)
>mm_chr3_52768991_52769795
Length = 805
Score = 752 bits (389), Expect = 0.0
Identities = 401/405 (99%)
Strand = Plus / Minus
Query: 1 agggcagagaatgcacattcttctttgtaaatcttgttatttttgccctctggaggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agggcagagaatgcacattcttctttgtaaatcttgttatttttgccctctggaggaagc 546
Query: 61 agactggcgaagtgcctccagcctgtgacttctcagattcaaacgacatggaggtgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agactggcgaagtgcctccagcctgtgacttctcagattcaaacgacatggaggtgagaa 486
Query: 121 gatacatagagcccaggggtcctgaggaatcagagggataaatctcagctgatgcctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatacatagagcccaggggtcctgaggaatcagagggataaatctcagctgatgcctctg 426
Query: 181 agagaccgagagacagccaggggccgttgaatagactctttcagactcctcctgtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agagaccgagagacagccaggggccgttgaatagactctttcagactcctcctgtggctc 366
Query: 241 catcttagcatagcctcactgggagtctgtcctgagctcacctcataaatgggtctctga 300
|||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 catcaaagcagagcctcactgggagtctgacctgagctcacctcataaatgggtctctga 306
Query: 301 tgtcataaaaaggaacccccatcttgatttcacccctaataactgacctatcatgaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtcataaaaaggaacccccatcttgatttcacccctaataactgacctatcatgaatga 246
Query: 361 atactctaagaatgttctagaatctagtaaataaatagtctatac 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atactctaagaatgttctagaatctagtaaataaatagtctatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
