Query= MSMg01no472_d21.b1 MSMg01no472_d21.b1 CHROMAT_FILE:
MSMg01no472_d21.b1 PHD_FILE: MSMg01no472_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:48 2005
(461 letters)
>mm_chr3_81239635_81240499
Length = 865
Score = 837 bits (433), Expect = 0.0
Identities = 453/461 (98%), Gaps = 4/461 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacaaagatccttgttgaattccccaggtgcaaatagaaaaggcttcactcaag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaaagaaccttgttgaattccccaggtgcaaatagaaaaggcttcactcaag 264
Query: 65 aagattatgaagggtatag---gagcattgtatctgaaatacaagctagaatacactaat 121
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagattatgaagggtatagttggagcattgtatctgaaatacaagctagaatacactaat 324
Query: 122 tgccatcataaaaggtttgaagatggttgagaggattagaaa-gagacatctgaagaagg 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgccatcataaaaggtttgaagatggttgagaggattagaaaagagacatctgaagaagg 384
Query: 181 tgaaatttgaacaggtggtcttctaggataagtacaatcttgccatgatgtctgggaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaatttgaacaggtggtcttctaggataagtacaatcttgccatgatgtctgggaagg 444
Query: 241 agaaaagagagcaaggattcctgagagcagatgaagcattaataatatcagaaaagaagg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaagagagcaaggattcctgagagcagatgaagcattaataatatcagaaaagaaga 504
Query: 301 agatgatggggcttgtttgtggctgtgtataactgcagttttcagtattcctttgtatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agatgatggggcttgtttgtggctgtgtataactgcagttttcagtattcctttgtatgt 564
Query: 361 gtagaacagaagatgtcctgagacataaactcactttgtgaatgacttcagtatatatct 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 gtagaacagaagatgtcctgagacataaactcactttgtgaatgccttcagtatatatct 624
Query: 421 tggtatatagataatgtaacagtcttaaaggaaaacctggt 461
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 tggtatatagataatgtaatagtcttaaaggaaaacctggt 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 865
Length adjustment: 10
Effective length of query: 451
Effective length of database: 855
Effective search space: 385605
Effective search space used: 385605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_d21.g1 MSMg01no472_d21.g1 CHROMAT_FILE:
MSMg01no472_d21.g1 PHD_FILE: MSMg01no472_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:49 2005
(492 letters)
>mm_chr3_81435089_81435979
Length = 891
Score = 659 bits (341), Expect = 0.0
Identities = 392/419 (93%), Gaps = 19/419 (4%)
Strand = Plus / Minus
Query: 1 aattattgttataaatcatctttaaataattcaatgctttgtaacataagtgctcccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aattattgttataaatcatctttaaataattcaatgctttgtaacataagtgctcccata 402
Query: 61 aatgatttacttgttcttttattattcctagagaccatattttatgtaatcttataaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aatgatttacttgttcttttattattcctagagaccatattttatgtaatcttataaaca 342
Query: 121 aattggatttctgcttggtaattttctatttctatgatatatctgtttgtaacctgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aattggatttctgcttggtaattttctatttctatgatatatctgtttgtaacctgttta 282
Query: 181 gaaaaaaatacaatgaaggatgtcattgtcaccaacagcatctacatcattactctctac 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaaaaaatacgatgaaggatgtcattgtcaccaacagcatctacatcattactctctac 222
Query: 241 tcatgtttattctttcccaacaacacacacacacacacacacacactcacacacacatac 300
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 221 tcatg-ctattctttcccaacaacacacacacacacacacacaca--aacacacacacac 165
Query: 301 acacaagcacacatactgactgtatacataatctagcaataatttaagtataacaaa--- 357
||||| |||||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 164 acaca--cacacacactgactatatacataatctaacaataatttaagtataacaaaaca 107
Query: 358 -----------acacacacacactgactgtatacataatccaacaataatttaagtata 405
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 106 cacacacacacacacacacacactgactgtatacataatctaacaataatttaagtata 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
