Query= MSMg01no472_f01.b1 MSMg01no472_f01.b1 CHROMAT_FILE:
MSMg01no472_f01.b1 PHD_FILE: MSMg01no472_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:54 2005
(381 letters)
>mm_chr3_25465840_25466620
Length = 781
Score = 648 bits (335), Expect = 0.0
Identities = 370/389 (95%), Gaps = 14/389 (3%)
Strand = Plus / Plus
Query: 1 ctcatctgaaaataggaacatgtgtct------tggtttctcaagtggttttgtcagctt 54
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 195 ctcatctgaaaataggaacatgtgtctgtgtcttggtttctcaagtggttttgtcagctt 254
Query: 55 aagcatctgaaaacttattctccagttatatgatgtgaaatagaaatagatttttggctc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagcatctgaaaacttattctccagttatatgatgtgaaatagaaatagatttttggctc 314
Query: 115 attttcctgagtgttaaaggtacgtaggctattagctaaagcatgtagagttgcatagaa 174
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 attttcctgagtgttaaaggtacataggctattagctaaagcatgtagagttgcatagaa 374
Query: 175 aactgagtaccaactctcaatacatcttctagacagtctttgatattttactggatattt 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aactgaggaccaactctcaatacatcttctagacagtctttgatattttactggatattt 434
Query: 235 tcctgtgtttgtttac----tttaacataaacataaccatattacagcagtgcttcatga 290
|||||||| | || |||||||||||||||||||||||| ||||||| |||||||
Sbjct: 435 tcctgtgtct----acataatttaacataaacataaccatattatagcagtgtttcatga 490
Query: 291 actgtctttatatgttagatgattgctaatgtctctaggggaaaagggcagccctgtaat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actgtctttatatgttagatgattgctaatgtctctaggggaaaagggcagccctgtaat 550
Query: 351 attcttctgatgtcggagaggaacagggg 379
|||||||||||||||||||||||||||||
Sbjct: 551 attcttctgatgtcggagaggaacagggg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_f01.g1 MSMg01no472_f01.g1 CHROMAT_FILE:
MSMg01no472_f01.g1 PHD_FILE: MSMg01no472_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:54 2005
(164 letters)
>mm_chr3_25605908_25606470
Length = 563
Score = 310 bits (160), Expect = 4e-89
Identities = 163/164 (99%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1 aacttcaacacatagccaaagtttagaaaatgaaagtaaagtagcaggcatctggatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacttcaacacatagccaaagtttagaaaatgaaagtaaagtagcaggcatctggatttg 304
Query: 61 ccctcagctctttgttccatgtgatttccagttgcagaatgctcatgagacatatacagg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 303 ccctcagctctttgttccatgtgatttcca-ttgcagaatgctcatgagacatatacagg 245
Query: 121 gtagtgtggaaggtagaatttcttacagagtgaaatgcagtaca 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtagtgtggaaggtagaatttcttacagagtgaaatgcagtaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 563
Length adjustment: 8
Effective length of query: 156
Effective length of database: 555
Effective search space: 86580
Effective search space used: 86580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
