Query= MSMg01no472_f18.b1 MSMg01no472_f18.b1 CHROMAT_FILE:
MSMg01no472_f18.b1 PHD_FILE: MSMg01no472_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:58 2005
(487 letters)
>mm_chr3_124996513_124997399
Length = 887
Score = 847 bits (438), Expect = 0.0
Identities = 477/500 (95%), Gaps = 17/500 (3%)
Strand = Plus / Plus
Query: 5 gaattcttttgatccgattccaggtttacaggatgggaatcctgagtcctgcagttcctc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttttgatctgattccaggtttacaggatgggaatcctgagtcctgcagttcctc 263
Query: 65 tttcactacaaggtactgacaattgcgaaaccacaggtgcaaaggagttttctcttcctt 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcactacaaggtactgacacttgcgaaaccacaggtgcaaaggagttttctcttcctt 323
Query: 125 acattgttttctacagatttttggccacaataataatactgctaattaacccatgaactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acattgttttctacagatttttggccacaataataatactgctaattaacccatgaactt 383
Query: 185 ggacaaaaataatgattgaaaacaggagtggaaggaaacctcaagggaaacaatccaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggacaaaaataatgattgaaaacaggagtggaaggaaacctcaagggaaacaatccaaag 443
Query: 245 cagatgttgtaaaataatttaaataaatatgaga-gaaatgagaaagatataagcaacat 303
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 444 cagatgttgtaaaataatttaaataaatatgaaaagaaatgagaaagatataagcaacat 503
Query: 304 gcttttgaaatacctagtaacaagtgactgaaaatttttcctaggtatatttaagtgggc 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 gcttttgaaatacctagtaacaagtgactgaaaattttccctaggtatatttaagtgggc 563
Query: 364 agttaaactgaacaccacaacctagcactactgatactaacactggtcatgtactttgtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 agttaaactgaacaccacaacctagcactactgatactaacactggtcatgtattttgtt 623
Query: 424 tgattgtttgttt----------------tttgagacagggtttctttgtgtagccctgg 467
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 tgtttgtttgtttgtttgtctgtttgttttttgagacagggtttctttgtgtagccctgg 683
Query: 468 ctgccctggaactcactctg 487
||||||||||||||||||||
Sbjct: 684 ctgccctggaactcactctg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_f18.g1 MSMg01no472_f18.g1 CHROMAT_FILE:
MSMg01no472_f18.g1 PHD_FILE: MSMg01no472_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:58 2005
(477 letters)
>mm_chr3_125169869_125170750
Length = 882
Score = 820 bits (424), Expect = 0.0
Identities = 465/486 (95%), Gaps = 13/486 (2%)
Strand = Plus / Minus
Query: 1 cactgtactcatcgacactgataggactgatgtgaactctgacttttagtccctcttcat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 486 cactgtactcatcgacactgataggactgatgtgaactctgactttcagtccctcttcat 427
Query: 61 ttaaagtctcattctccacccttgcccacccatgcacccccatttcctttttccacgg-- 118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttaaagtctctttctccacccttgcccacccatgcacccccatttcctttttccacggtt 367
Query: 119 ---ttttttttaaaatcccattgttgctatgagcctgacctaacctttcaaacttttttg 175
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttttttttttttaaatcccattgttgctatgagcctgacctaacctttcaaacttttttg 307
Query: 176 ttccgaagcctgtaacttctgaacagtcacacattcaaaagagtgtgcttggattgctgc 235
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 ttctgaagcctctaacttctgaacagtcacacattcaatagagtgtgcttggattgctgc 247
Query: 236 ccattactctctcacatttagtgtgcttcaatatcacgaagggagttctcttccccctcc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccattactctctcacatttagtgtgcttcaatatcacgaagggagttctcttccccctcc 187
Query: 296 ctccctctttcttctccctcttccctctgtctctcaccctctctccctccctttcttccc 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 186 ctccctctttcttctccctcttccctctgtctctcaccctctctccctccctctcttccc 127
Query: 356 tctgcctctcaccctctctccctccctctcttccctctgcctctcaccctctctccctct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tctgcctctcaccctctctccctccctctcttccctctgcctctcaccctctctccctct 67
Query: 416 ctc--------tctccctctgcttcttttccttcctctctttcacacacacacacacaca 467
||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 66 ctccctctctctctccctctgcttcttttccttcctctctttcatacacacacacacaca 7
Query: 468 cacaca 473
||||||
Sbjct: 6 cacaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 882
Length adjustment: 10
Effective length of query: 467
Effective length of database: 872
Effective search space: 407224
Effective search space used: 407224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
