Query= MSMg01no472_h03.b1 MSMg01no472_h03.b1 CHROMAT_FILE:
MSMg01no472_h03.b1 PHD_FILE: MSMg01no472_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:05 2005
(504 letters)
>mm_chr3_44846859_44847762
Length = 904
Score = 692 bits (358), Expect = 0.0
Identities = 373/378 (98%), Gaps = 1/378 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagcttgaccctagaggcttcacttttaaacactatacctcatcacttctatt 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 378 gaattcaaagcaggaacctagaggcttcacttttaaacactatacctcatcacttctact 319
Query: 65 tttatttttcaaattttaactgttcataaagaattttgtcattaataaatatcactattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttatttttcaaattttaactgttcataaagaattttgtcattaataaatatcactattt 259
Query: 125 ctcattaattgaaataacatgcatattaatggatttggatgtgggc-ttttttttcattt 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 258 ctcattaattgaaataacatgcatattaatggatttggatgtgggctttttttttcattt 199
Query: 184 tttaattatatattttcttcatttacatttcaaatgctatccctaaagtccgctatactc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttaattatatattttcttcatttacatttcaaatgctatccctaaagtccgctatactc 139
Query: 244 tcccgctgccctggtccccaacccacccactcccacttcctggccctggcattcccctgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tcccgctgccctggtccccaacccacccactcccacttcctggccctggcattcccctgt 79
Query: 304 actggggcatatgatctatgcaagaccaagggcctctcctctcattgatggcccactagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 actggggcatatgatctatgcaagaccaagggcctctcctctcattgatggcccactagg 19
Query: 364 ccatctgctacatatgca 381
||||||||||||||||||
Sbjct: 18 ccatctgctacatatgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_h03.g1 MSMg01no472_h03.g1 CHROMAT_FILE:
MSMg01no472_h03.g1 PHD_FILE: MSMg01no472_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:05 2005
(497 letters)
>mm_chr3_44717407_44718303
Length = 897
Score = 880 bits (455), Expect = 0.0
Identities = 485/495 (97%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 3 taattagttttcttgctgtgtattggccttcagaatggagagaatttttctaagttcttg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taattagttttcttgctgtgtattggccttcagaatggagagaatttttctaagttcttg 262
Query: 63 gatcatcatataaagtatatttaaaaaaatgaaagtaactccttgtgcagaacttaaaac 122
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 gatcatcatataaagtatattaaaaaaaatgaaagtaactccttgtggagaacttaaaac 322
Query: 123 aatgtacataaagatgggtaatgaaaaatgacagcttaaagagaacattctgttttctag 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgtacataaagatgagtaatgaaaaatgacagcttaaagagaacattctgttttctag 382
Query: 183 aaaggacatggcaattgtgttcatgaactcacagtaacaattgctacctatataagattt 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 aaaggacatggcaattgtgttcatgaactcacagtaacaattgctacctttataagattt 442
Query: 243 gcaaagtatcaggtcaaccagatcagtccagcagagattgaggaactataggcagttgat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcaaagtatcaggtcaaccagatcagtccagcagagattgaggaactataggcagttgat 502
Query: 303 agatgctaggggaggtcaagtgcttttagcttgtgtgtataagtattggtaaggctccca 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 agatgctaggggaggtcaagtgcttttagcttgtgtgtattagtattggtaaggctccca 562
Query: 363 actacccagtggatcgccacaaacccatacaaagatgaacagcacttattagactcaaag 422
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 563 actacccagtggatcgccacaaacacatacaaaggtgaacagcacttattagactcaaag 622
Query: 423 aacagtgttttttaaaaaaagagactacataaagctggaagggagtctaggtggagttgg 482
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 623 aacagtgttttttaaaaaa-gagactacataaaggtggaagggagtctaggtggagttgg 681
Query: 483 agaatgacaacaagg 497
|||| ||||||||||
Sbjct: 682 agaaagacaacaagg 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
