Query= MSMg01no472_l18.b1 MSMg01no472_l18.b1 CHROMAT_FILE:
MSMg01no472_l18.b1 PHD_FILE: MSMg01no472_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:28 2005
(497 letters)
>mm_chr3_23025684_23026580
Length = 897
Score = 868 bits (449), Expect = 0.0
Identities = 485/497 (97%)
Strand = Plus / Plus
Query: 1 gaatgatcttgaagttttacccttttatcttgcacctcctgagtactggatttgtggtgt 60
|||||||||||||||||||| |||| ||||||||||||||||||||||| || | |||||
Sbjct: 201 gaatgatcttgaagttttacgctttcatcttgcacctcctgagtactgggttagaggtgt 260
Query: 61 gctaccacaaagtcctaatatatgggctactagggactgcattcttggtttgtgaatgtt 120
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gctaccacaaagtcctagtatatgggctactagggaccgcattcttggtttgtgaatgtt 320
Query: 121 cagctgacacagtactactaagttatttccccagcccctataaattctatttatatgaac 180
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctgtcacagtcctactaagttatttccccagcccctataaattctatttatatgaac 380
Query: 181 ttacttctcatgctataatataaaataaacttatgatttcataaaatattgacaaactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacttctcatgctataatataaaataaacttatgatttcataaaatattgacaaactaa 440
Query: 241 atggtttctcattctactccatagaattctagagtaaagtttcttttaaatcctgttaat 300
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggtttctcagccaactccatagaattctagagtaaagtttcttttaaatcctgttaat 500
Query: 301 ttcatggacactttagtctatttgctgagaaagaaattaaaatagatgtgcagggtggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatggacactttagtctatttgctgagaaagaaattaaaatagatgtgcagggtggga 560
Query: 361 acagagcaggccatctgcctttttgtgttaaatgtaaatctatgaaatgtaacaagaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagagcaggccatctgcctttttgtgttaaatgtaaatctatgaaatgtaacaagaggg 620
Query: 421 tggaacatttaaaaaccttgaattgaatctttaattttataggcgaataaaaaagaacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaacatttaaaaaccttgaattgaatctttaattttataggcgaataaaaaagaacac 680
Query: 481 ttgtgtactattgtact 497
|||||||||||||||||
Sbjct: 681 ttgtgtactattgtact 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_l18.g1 MSMg01no472_l18.g1 CHROMAT_FILE:
MSMg01no472_l18.g1 PHD_FILE: MSMg01no472_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:28 2005
(476 letters)
>mm_chr3_23198827_23199701
Length = 875
Score = 688 bits (356), Expect = 0.0
Identities = 450/490 (91%), Gaps = 21/490 (4%)
Strand = Plus / Minus
Query: 1 atggagtccaggatcaataaaaaattattttttctcaaacctgtaaggtgggaatgtata 60
|||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct: 522 atggagtccaggatgaataagaaatta-tttttctcaaacctataaggtgggaatgtata 464
Query: 61 tgttctctgacttacatccattcacatacatacactcacatatatgaacactctctcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgttctctgacttacatccattcacatacatacactcacatatatgaacactctctcaca 404
Query: 121 cacatgctaaaatgagttcagttataaagacactggcaaatatcagtcaactggatcact 180
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 403 cacatgctaaaatgagttcagttataaagatactggaaaatatcagtcaactagatcact 344
Query: 181 ggcagctttcttcccacataagttgct-cttgcctctgtatttctgctctcttggttccc 239
|||||||||||||||| | ||| || | |||||||||||||||||||| ||||| |||||
Sbjct: 343 ggcagctttcttcccatacaagctg-tgcttgcctctgtatttctgctttcttgattccc 285
Query: 240 atgcttgcttgcagttgattctatctgtagttgagttttgttttggttctattgattttc 299
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 284 atgcttgcttgcagctgattctatctgtagttcagttttgttttggttctattgattttg 225
Query: 300 ttggaatttcatgacagagtgtct---ta----------cttggttgcaaacatcactat 346
|||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 224 ttggaatttcatgacagagtgtctcactatatagcccagcttggttgcaaacatcactat 165
Query: 347 atggcctcggcttcccatagtgagagcagataggcatgaagaccacttggatatagatcc 406
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 164 atggcctcagcttcccatagtgagagcagataggcatgaagaccacttagatatagatca 105
Query: 407 aaaatatctttaccatttttagtctttgaaaaaaa---catgtttttg-agtaaagccga 462
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
Sbjct: 104 aaaatatctttaccatttttagtctttgaaaaaaaaaacatgttttttca-taaagccta 46
Query: 463 ccttactgtt 472
||||||||||
Sbjct: 45 ccttactgtt 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
