BAC Information

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BAC

Clone NameMSMg01-472M10
Chromosome3 (Build37)
Map Location 48,431,349 - 48,431,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M10.T7 (MSMg01no472_m10.b1)MSMg01-472M10.TJ (MSMg01no472_m10.g1)
ACCAG555230AG555231
length759754
length of high quality
(start - end)
245 (73 - 317)496 (80 - 575)
definitionCHROMAT_FILE: MSMg01no472_m10.b1 PHD_FILE: MSMg01no472_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005CHROMAT_FILE: MSMg01no472_m10.g1 PHD_FILE: MSMg01no472_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTCGATAAGAGCCCCATCTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTGTTGACTGTGCCTTCTGTCTTGCAGAAGCTTTGCAGTTTCAT
TATGTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCTTCTGATTCCATATCTTTGAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTAAAAGGAGATAGGAATGGATCAATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGCTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCCTTCATTCTATTCCATTGGG
CTACTTGGCCGGTACTATAACACGAACATGGAGATTTTTATCACAATTGT
TTTTTTTTTTATGCTTAAGTCAGGCCTTGGTGGATTCCCCCCCTCGCTTC
TTTTTTTCTTTTGAAAAAAAGGTTTTGGCCATCTCCGCGGCTTTTTGTTT
ATTCTGCTC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAATCACCTCACTGGGGC
TTCATTAAAACAAAATAAAATGAATGGTTGAAAATGAGAACCAAAAGATG
TGTATGTAGAAAGAACTACTAATCAAAGTTGTTCAGAATTTATTGTAGAT
GTAAATGCAGAATAGCTTAAAGTGAATGAATAGCTCAATGAGCAAGCAAA
GGAGAATAAAGAGAACACATTCTATATAAATTATGTAAAATAAAGTATAC
ATGCACTTTACATACATTTGTTTCTTTTACAAATTTTCTTTTAGCTGGTT
TTGCTATTTTAAAATTAAAATTCTTATATTGATTTATTGATCAATGGCCT
TTCTGCACACTTTCTCACTACTAAACCCTTATTCTAGCTCCCACACTAAA
GCAAATAAAGTCAATTTGGGCACCATTTTCTTACACAGCCTTTGTAAGTA
TTTCATGAACCTGATATGTTTTAGCTAACAGATTATAAATGTTCTGTTTA
AAGATTAAAATCTGTGTTATTTGTAGCAGGAGAGTTTACCTTTAACCTTG
TGATGGTTAATCTTGTCAACTTGATGTGATTTGAATCACCTAGGAGACAA
ACCTCTGTTCTGTTTCTTGAGAGTGCTTCCAGTAAGTTTAAATTGGGTGG
GTAAATTATTTTGAATGTACCCTGCCCCTTTCTTGAGATTGGACTCCCCC
TGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m10.g1 MSMg01no472_m10.g1 CHROMAT_FILE:
MSMg01no472_m10.g1 PHD_FILE: MSMg01no472_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:31 2005
         (496 letters)



>mm_chr3_48431149_48432044
          Length = 896

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaatcacctcactggggcttcattaaaacaaaataaaatgaatggttgaaaatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaatcacctcactggggcttcattaaaacaaaataaaatgaatggttgaaaatgaga 260

                                                                       
Query: 61  accaaaagatgtgtatgtagaaagaactactaatcaaagttgttcagaatttattgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaaagatgtgtatgtagaaagaactactaatcaaagttgttcagaatttattgtaga 320

                                                                       
Query: 121 tgtaaatgcagaatagcttaaagtgaatgaatagctcaatgagcaagcaaaggagaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaatgcagaatagcttaaagtgaatgaatagctcaatgagcaagcaaaggagaataa 380

                                                                       
Query: 181 agagaacacattctatataaattatgtaaaataaagtatacatgcactttacatacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaacacattctatataaattatgtaaaataaagtatacatgcactttacatacattt 440

                                                                       
Query: 241 gtttcttttacaaattttcttttagctggttttgctattttaaaattaaaattcttatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcttttacaaattttcttttagctggttttgctattttaaaattaaaattcttatat 500

                                                                       
Query: 301 tgatttattgatcaatggcctttctgcacactttctcactactaaacccttattctagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatttattgatcaatggcctttctgcacactttctcactactaaacccttattctagct 560

                                                                       
Query: 361 cccacactaaagcaaataaagtcaatttgggcaccattttcttacacagcctttgtaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccacactaaagcaaataaagtcaatttgggcaccattttcttacacagcctttgtaagt 620

                                                                       
Query: 421 atttcatgaacctgatatgttttagctaacagattataaatgttctgtttaaagattaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcatgaacctgatatgttttagctaacagattataaatgttctgtttaaagattaaa 680

                           
Query: 481 atctgtgttatttgta 496
           ||||||||||||||||
Sbjct: 681 atctgtgttatttgta 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)