BAC Information

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BAC

Clone NameMSMg01-472N04
Chromosome3 (Build37)
Map Location 155,809,342 - 155,989,741
singlet/doubletdoublet
Overlap geneLOC100040901
Upstream geneLrrc44, EG383956, Scp2-ps1, EG668902, LOC624519
Downstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N04.T7 (MSMg01no472_n04.b1)MSMg01-472N04.TJ (MSMg01no472_n04.g1)
ACCAG555266AG555267
length794763
length of high quality
(start - end)		209 (45 - 253)530 (75 - 604)
definitionCHROMAT_FILE: MSMg01no472_n04.b1 PHD_FILE: MSMg01no472_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:35 2005CHROMAT_FILE: MSMg01no472_n04.g1 PHD_FILE: MSMg01no472_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,809,342 - 155,809,531)(155,989,214 - 155,989,741)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCATTCCTGCTGGGATGGAGGAGGGCATCATGGATATCCACAAC
CCCTATACAATGTGTGTTATCATGCTGTGGACTTTGAGAAGGGTTTTCTA
TGAAGGTTTTCTGATGGAAACAAATCCATTATTCTGAAGATGGAGGTTCT
TTTGTGTATTGGTTGTGGGGCTGGGTAAGGATTTTATGGAAATATTTTAG
GTTTGGTTGNTTTTGTTTTTTGGATTTTTTTGTGTGTGTTTTTGTGANTG
GGTGTTTTGGTTTTTTTTTTTCGCTGGTGTAAAGGAGCCTGTGTTCCATT
GTTTTTTGTTTTTGTGTTGTCCTACTGAATGCCCCCTCACCTTTCAGCCG
TCTGTCGCTGTTGGCTTTCTTTTCTCGCGTTTTTTCTTTTCCTTCTCCAC
TTCACTCCTCTTTTTGGATCTCTTCTTAGCCTTTCTTCATTTTAATCCTT
TCAATACGGCGGCGCAAGGCACTTTAATTATTTTTGCATCCGGTTCTTCC
CCCTCTACTCTATTGCTCTTTCTTCCCCCCTTTCCGCTTTTCTCCTTGCA
TGTCAGTCCCCTATTCTATCACCCTTTTTCATTTTTTTTTCCTCAAACCG
CTGTGTCACTTATCATTCATCTCTGCTTTCATTTTATGCTCTTTTACTTA
AATATTTCTCTATCCTCACTTTCCCATTTTTTTGTTCGGACCCATATATA
TCATTTATGTTTCATTATTCCATTATCTTTCCATTTCATTTTTN

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATTATTATTCCCTAAGATTTACAA
AAATATTGTCAGCCATAGAATGCTACTTTTATACAGCAGTTTGTCTTTTT
CTCTTTTCTATAATAAGATTGTAGATAATAAGAACAGCAAATGCAGTTAC
TTTCTGTCTAAGGAAGGTGTTTGTGGATGGCTCTGTATTTTATATAATTG
CTTTCTCTTTCTAATGGGACAGTTTGTGTTTATTTTGATTATTTTTGATG
GGAAGTCATGGGCTATCGAAACAATAATCATTTCCAGCTGTTTTAATTTT
CTCACCCACTTTTAAAATCTGTGTTCCATTTCTGTGTCTTTAAAATTATT
ACTTCTCATTTCCTTAGATTCCTCCTTTTTTCATAATCACTCATCCTAAA
TGTTTCTTCCATGTCAGGTCCATCCTCAACTTGATTATTTCTTTTATTTA
TATTGAAGGTGATGTCCCCTGTGTTTATAGTGAGGCAATAATGTTACTGC
TATTAATGCAATTACTATAATAAATTATTTAGGATATTCTTGAGGCTTTC
AGCTTGTTGGATGGCGATGTATCCTACAATATAGGAGGTCCTGGGCTTGT
TTCTGAGCACCCTTAACCAAAAGTTGTTGGCCCAGCCTTCTCCCATTCAT
GATTTCCCCTATAAGCCTATTACACATTTATGACGCCTTGCCGCCACCTC
TCTTTTATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n04.b1 MSMg01no472_n04.b1 CHROMAT_FILE:
MSMg01no472_n04.b1 PHD_FILE: MSMg01no472_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:35 2005
         (209 letters)



>mm_chr3_155809123_155809731
          Length = 609

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  tgctgggatggaggagggcatcatggatatccacaacccctatacaatgtgtgttatcat 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgctgggatggaggagggcatcatggatatccacaacccctatacaatgtgtgttatcat 279

                                                                       
Query: 80  gctgtggactttgagaagggttttctatgaaggttttctgatggaaacaaatccattatt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gctgtggactttgagaagggttttctatgaaggttttctgatggaaacaaatccattatt 339

                                                                       
Query: 140 ctgaagatggaggttcttttgtgtattggttgtggggctgggtaaggattttatggaaat 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgaagatggaggttcttttgtgtattggttgtggggctgggtaaggattttatggaaat 399

                     
Query: 200 attttaggtt 209
           ||||||||||
Sbjct: 400 attttaggtt 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no472_n04.g1 MSMg01no472_n04.g1 CHROMAT_FILE:
MSMg01no472_n04.g1 PHD_FILE: MSMg01no472_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:35 2005
         (530 letters)



>mm_chr3_155989014_155989943
          Length = 930

 Score = 1013 bits (524), Expect = 0.0
 Identities = 527/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattattattccctaagatttacaaaaatattgtcagccatagaatgctacttttatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaattattattccctaagatttacaaaaatattgtcagccatagaatgctacttttatac 669

                                                                       
Query: 61  agcagtttgtctttttctcttttctataataagattgtagataataagaacagcaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agcagtttgtctttttctcttttctataataagattgtagataataagaacagcaaatgc 609

                                                                       
Query: 121 agttactttctgtctaaggaaggtgtttgtggatggctctgtattttatataattgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agttactttctgtctaaggaaggtgtttgtggatggctctgtattttatataattgcttt 549

                                                                       
Query: 181 ctctttctaatgggacagtttgtgtttattttgattatttttgatgggaagtcatgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctctttctaatgggacagtttgtgtttattttgattatttttgatgggaagtcatgggct 489

                                                                       
Query: 241 atcgaaacaataatcatttccagctgttttaattttctcacccacttttaaaatctgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atcgaaacaataatcatttccagctgttttaattttctcacccacttttaaaatctgtgt 429

                                                                       
Query: 301 tccatttctgtgtctttaaaattattacttctcatttccttagattcctccttttttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tccatttctgtgtctttaaaattattacttctcatttccttagattcctccttttttcat 369

                                                                       
Query: 361 aatcactcatcctaaatgtttcttccatgtcaggtccatcctcaacttgattatttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatcactcatcctaaatgtttcttccatgtcaggtccatcctcaacttgattatttcttt 309

                                                                       
Query: 421 tatttatattgaaggtgatgtcccctgtgtttatagtgaggcaataatgttactgctatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tatttatattgaaggtgatgtcccctgtgtttatagtgaggcaataatgttactgctatt 249

                                                           
Query: 481 aatgcaattactataataaattatttaggatattcttgaggctttcag 528
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 aatgcaattactataataaattatttaggatattcatgaggctttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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