BAC Information

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BAC

Clone NameMSMg01-473D09
Chromosome3 (Build37)
Map Location 96,568,219 - 96,568,591
singlet/doubletsinglet
Overlap geneZfp364
Upstream gene4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c
Downstream geneCd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473D09.T7 (MSMg01no473_d09.b1)MSMg01-473D09.TJ (MSMg01no473_d09.g1)
ACCAG555563AG555564
length855764
length of high quality
(start - end)		69 (136 - 204)467 (72 - 538)
definitionCHROMAT_FILE: MSMg01no473_d09.b1 PHD_FILE: MSMg01no473_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:11 2005CHROMAT_FILE: MSMg01no473_d09.g1 PHD_FILE: MSMg01no473_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTTGTGGCCGCCGAGGAGNAGGAAATTTCAAAACCCGCGGAGNCA
CCNCNTACTAACAACCAAACTAGATGGNTAAGATGCCCTGCTACTCAGAG
CTCATCCAGACTCGTGGCGCAGCCAGAAGAGGAGAACCGCTGCTGGGAAA
TGTAGCCCTGGGTTAGAGAAATCAGACTGCTCATCTGTTAACAGCTGTGC
CTGTCAGAGTTCCAGAAACACTCCAGGAGGTTCCCAACTACCGGACTCCA
TCGTCCTCTTCTGGCTTAGGTCACACACACTCACACACACACACTCACTC
ACATACATCTACCACGCCTTTTTTTTTTCTCCTGTCACACCCATCCCACA
CTCACACTTATATTTTCATATACTATTATCTATATATTACCATCCTTTAC
ATCATTTACCTCCTTCTTTTCTTTCTCTTTCTCCATTCATCCTCCTTCCC
TCATCCCGCACCATTCAACTCCTATCTCTTCATGTTTCACAATCTATCTA
TATCTTCCTGGATCACTTACATCTTGGCTCTATGTCTTTTTGTATCTCTC
TCCCTTACTTATCCTTTTTATTTCTCCCTACTTCCTCTCCTTCCTAATTA
TACACACCATACCTACTTGACTCTTCCTATTCCTCCCTTTACTCCTTCTC
CGATATACTTACCTATGCTATATCTCCTCCAGTCCTCCTTCTTCTTTTTC
CTTATTCTCTCTATCTTCTTTGTCTTATCTTTTTCCTTTACTTAACACTT
TTATATCTCTTCGCTTCCCCCTTCTACCTCTCTATCATCGCGCTCTTTTT
TTGTCTCCTTACCTGCGTATCCTTCTTCTTTCCTTCCTCCTTGATCCTCC
TTGTG

ATATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCATTTTACATGGCAAGTTCC
AAAGCAGCCTGAGCTACAAGAGAGTCTTGACCAGCCCTGCCAAGATAAAA
GGAACATAAAAATTAAACTGTTTGTAATATTAAGGTAATAAAAGAAAAGG
ACACTCCCAAAATCATCTTAAGATTGGCTACCATCATGGCAGACTTGTTT
GTTTGTTTGTTTGTTTGTTTGTTTGTTCTTCCAAGTCAGGGTTTCACTGT
GTAGCCCTGGCTGTCCTAGATCTCACTCTGTAGACTATCTGGCCTTATAT
TCAAAGATCTGCCTGCCTCTGCCCCCTGAGTGCTGAGATTAAAAACGTGT
GCCACTACCACCCAGCTAATTTTACTTTTTTATCGAAGATTTATTTTTAA
TTCTATATGCGTGTGTATCTAAGGATGGGTATGTACACACAAGTGTATCT
GCAAATGTAGGTCAGGAGTCAGATCCCTCTAAAGCTAGAGTTAAAAGTGG
CTGTGAACCACCCAGGTAGAGGCAGAAGTATGGAGATGTCTGTGAGTTCA
AAGCTAACCTAGTCTATCTACATATTTGCGCACCATCAATAGCTACCAAG
TAAGACCTGCTTTTTTAAAAAAGAGCACTGAAGGAATGTACCGACAGCAT
GATAGAACGAAGGAAGTAATTAATTAATCAAGTACTGTATGTTTTCCTCC
TTCTCACCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_d09.g1 MSMg01no473_d09.g1 CHROMAT_FILE:
MSMg01no473_d09.g1 PHD_FILE: MSMg01no473_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:11 2005
         (467 letters)



>mm_chr3_96568219_96569085
          Length = 867

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/377 (98%), Gaps = 5/377 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagccattttacatggcaagttccaaagcagcctgagctacaagagagtcttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaggccagccattttacatggcaagttccaaagcagcctgagctacaagagagtcttgac 314

                                                                       
Query: 61  cagccctgccaagataaaaggaacataaaaattaaactgtttgtaatattaaggtaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagccctgccaagataaaaggaacataaaaattaaactgtttgtaatattaaggtaataa 254

                                                                       
Query: 121 aagaaaaggacactcccaaaatcatcttaagattggctaccatcatggcagacttgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aagaaaaggacactcccaaaatcatcttaagattggctaccatcatggcagacttgtttg 194

                                                                       
Query: 181 tttgtttgtttgtttgtttgtttgttcttccaagtcagggtttcactgtgtagccctggc 240
           |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||
Sbjct: 193 tttgtttgtttgtttgtttgttt----ttccaagtcagggtttcactgtgtagccctggc 138

                                                                       
Query: 241 tgtcctagatctcactctgtagacta-tctggccttatattcaaagatctgcctgcctct 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 137 tgtcctagatctcactctgtagactagtctggccttatattcaaagatctgcctgcctct 78

                                                                       
Query: 300 gccccctgagtgctgagattaaaaacgtgtgccactaccacccagctaattttacttttt 359
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gcctcctgagtgctgagattaaaaacgtgtgccactaccacccagctaattttacttttt 18

                            
Query: 360 tatcgaagatttatttt 376
           |||||||||||||||||
Sbjct: 17  tatcgaagatttatttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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