BAC Information

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BAC

Clone NameMSMg01-473F06
Chromosome3 (Build37)
Map Location 68,885,335 - 69,027,523
singlet/doubletdoublet
Overlap geneKpna4, Arl14
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272
Downstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473F06.T7 (MSMg01no473_f06.b1)MSMg01-473F06.TJ (MSMg01no473_f06.g1)
ACCAG555653AG555654
length771783
length of high quality
(start - end)		627 (67 - 693)504 (73 - 576)
definitionCHROMAT_FILE: MSMg01no473_f06.b1 PHD_FILE: MSMg01no473_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:22 2005CHROMAT_FILE: MSMg01no473_f06.g1 PHD_FILE: MSMg01no473_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,026,897 - 69,027,523)(68,885,335 - 68,885,838)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTAAAAATTATCATTTTTTAAAAAAGATAAAGGAAGTTACAAACAAT
AGATGTCAAAAAGCTGATAGCATTTGTGTGTCTGTTTACAAAACAAAGAT
TTTCAAAACGTTAACATCCACAATTTAAGCTTCTTTTTGTTATTTTCTCA
CTATTCAATTACTACCTAAGGACAGGGTAGAAATTCAATGCCAGTAACAT
CTGGGAACTATATGAAAAAAATCCTGACTATATAAGCAGACAGCTATTTA
AACTTTAGTGGTCATACAAAATTAGTTAACATTTATCTGACTCTAAATAG
GACTTTCAAATCATCCAACACGTTAACCTTTACAAAATATAATTTCTTCC
GTTTCAATGACCATTACCCCATAGTTTGCTTAGAAAGTTCCTTCTTTAGC
TGAGCAGGGTGGAAACCACCCCCAAAAGTTTGCTGACTCAGCAACTTACT
TTTCTTTTTGTTCCCCCACTTTACATGGGAAATAAAACAGATTTCCCATT
TCTACTTCATCATTGTCTCATTTCTGCTTGAAGATTGCTAAGGTCTCTCT
TGTCCTTCGGAAGCTTTTCAGAAACTCGGTTAATTTCCTGAACCCGTCAT
CCAGCCCTTCTCCAGTGACCGCACAGCAGGGTTGCACATACCAGTTCCGG
TTGCTGCACAGCTTCTTCACCTTTGACATCCTGGTGATGTCTTCGGCGCT
CAAAGCTCCCGGNAAGTTCTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTGTGTGTGTGACTTGATATTACTGT
TCAATATCAGAGTAAATAAAAGTCAAATGCAATTTCATTAAAAAGGTACA
AACTGAAAACATTTAAAATAGAACATATAGAATTTAGTAATTTTATCTTC
AAGATTTTACCAGCAAACTAATTTAAAACATGGTAATAATTCACATCTTC
CTACATATGGCTACAGCATAGTAACAGTCAAAAATTAGACTCAGTTAACA
TTCTCAACAGGTACAAAATACAGAAAATCCACAAAGTGAAATAACCTAAG
CAATTAAATTCAAGACTAGAAGCCTAGAAAGAATGTTTTATTAAGAAAAA
AACCATAAATAGAAGAAAACTAAATTAAAATGGAAACGAGGCAAAACAAT
TATCAGACTGAGGCTCTTTGAGGCAGATAATGGTGTAAATGGGTACAACC
CTTAGAGACGTGAAAGGGAACATTTTCCTATTTACCCAGTTATCTAACTT
TGGAAAAAATGGTCTCCATAGCCAGTCCAGACTAGCCTTAAAGTCCATAT
TGTACTGTGTCTGCCTTTAAAGTACTGGGATGATGTTACCATGACATAGA
AGCTATTCTTTTATGGATATTTTTAAATAATTTTTATAGAATATAAAAGA
TATATTACTACCCCTATTTGCCTTAAATATTTTAAAATTTATAAAAAATT
TTAATAAATCCCACATTAAAATTTAAAAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_f06.b1 MSMg01no473_f06.b1 CHROMAT_FILE:
MSMg01no473_f06.b1 PHD_FILE: MSMg01no473_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:22 2005
         (627 letters)



>mm_chr3_69026697_69027723
          Length = 1027

 Score = 1189 bits (615), Expect = 0.0
 Identities = 624/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttaaaaaagataaaggaagttacaaacaatagatgtcaaaaagctgatagcatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ttttttaaaaaagataaaggaagttacaaacaatagatgtcaaaaagctgatagcatttg 768

                                                                       
Query: 61  tgtgtctgtttacaaaacaaagattttcaaaacgttaacatccacaatttaagcttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgtgtctgtttacaaaacaaagattttcaaaacgttaacatccacaatttaagcttcttt 708

                                                                       
Query: 121 ttgttattttctcactattcaattactacctaaggacagggtagaaattcaatgccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttgttattttctcactattcaattactacctaaggacagggtagaaattcaatgccagta 648

                                                                       
Query: 181 acatctgggaactatatgaaaaaaatcctgactatataagcagacagctatttaaacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acatctgggaactatatgaaaaaaatcctgactatataagcagacagctatttaaacttt 588

                                                                       
Query: 241 agtggtcatacaaaattagttaacatttatctgactctaaataggactttcaaatcatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agtggtcatacaaaattagttaacatttatctgactctaaataggactttcaaatcatcc 528

                                                                       
Query: 301 aacacgttaacctttacaaaatataatttcttccgtttcaatgaccattaccccatagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aacacgttaacctttacaaaatataatttcttccgtttcaatgaccattaccccatagtt 468

                                                                       
Query: 361 tgcttagaaagttccttctttagctgagcagggtggaaaccacccccaaaagtttgctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 467 tgcttagaaagttccttctttagctgagcagggtggaaaccacccccaaaagtttgccga 408

                                                                       
Query: 421 ctcagcaacttacttttctttttgttcccccactttacatgggaaataaaacagatttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctcagcaacttacttttctttttgttcccccactttacatgggaaataaaacagatttcc 348

                                                                       
Query: 481 catttctacttcatcattgtctcatttctgcttgaagattgctaaggtctctcttgtcct 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 catttccacttcatcattgtctcatttctgcttgaagattgctaaggtctctcttgtcct 288

                                                                       
Query: 541 tcggaagcttttcagaaactcggttaatttcctgaacccgtcatccagcccttctccagt 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcggtagcttttcagaaactcggttaatttcctgaacccgtcatccagcccttctccagt 228

                                      
Query: 601 gaccgcacagcagggttgcacatacca 627
           |||||||||||||||||||||||||||
Sbjct: 227 gaccgcacagcagggttgcacatacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_f06.g1 MSMg01no473_f06.g1 CHROMAT_FILE:
MSMg01no473_f06.g1 PHD_FILE: MSMg01no473_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:22 2005
         (504 letters)



>mm_chr3_68885135_68886038
          Length = 904

 Score =  967 bits (500), Expect = 0.0
 Identities = 503/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgtgtgtgtgacttgatattactgttcaatatcagagtaaataaaagtcaaatgcaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtgtgtgtgacttgatattattgttcaatatcagagtaaataaaagtcaaatgcaa 260

                                                                       
Query: 61  tttcattaaaaaggtacaaactgaaaacatttaaaatagaacatatagaatttagtaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcattaaaaaggtacaaactgaaaacatttaaaatagaacatatagaatttagtaatt 320

                                                                       
Query: 121 ttatcttcaagattttaccagcaaactaatttaaaacatggtaataattcacatcttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatcttcaagattttaccagcaaactaatttaaaacatggtaataattcacatcttcct 380

                                                                       
Query: 181 acatatggctacagcatagtaacagtcaaaaattagactcagttaacattctcaacaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatatggctacagcatagtaacagtcaaaaattagactcagttaacattctcaacaggt 440

                                                                       
Query: 241 acaaaatacagaaaatccacaaagtgaaataacctaagcaattaaattcaagactagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaatacagaaaatccacaaagtgaaataacctaagcaattaaattcaagactagaag 500

                                                                       
Query: 301 cctagaaagaatgttttattaagaaaaaaaccataaatagaagaaaactaaattaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctagaaagaatgttttattaagaaaaaaaccataaatagaagaaaactaaattaaaatg 560

                                                                       
Query: 361 gaaacgaggcaaaacaattatcagactgaggctctttgaggcagataatggtgtaaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaacgaggcaaaacaattatcagactgaggctctttgaggcagataatggtgtaaatgg 620

                                                                       
Query: 421 gtacaacccttagagacgtgaaagggaacattttcctatttacccagttatctaactttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtacaacccttagagacgtgaaagggaacattttcctatttacccagttatctaactttg 680

                                   
Query: 481 gaaaaaatggtctccatagccagt 504
           ||||||||||||||||||||||||
Sbjct: 681 gaaaaaatggtctccatagccagt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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