Query= MSMg01no473_f13.b1 MSMg01no473_f13.b1 CHROMAT_FILE:
MSMg01no473_f13.b1 PHD_FILE: MSMg01no473_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:23 2005
(571 letters)
>mm_chr3_143692299_143693269
Length = 971
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Plus
Query: 1 ttttcttttcaaatgtgtgacaaaatgcactttgataaccatgatgtgtatgtggctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttttcaaatgtgtgacaaaatgcactttgataaccatgatgtgtatgtggctcct 260
Query: 61 gtaagtgaaactgccccttgcctatggccccttccacccttacttggccattgccaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagtgaaactgccccttgcctatggccccttccacccttacttggccattgccaagga 320
Query: 121 ctgagtgcttagcagaaagttctagaagacctcatcccatctgagccagttctggttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagtgcttagcagaaagttctagaagacctcatcccatctgagccagttctggttatc 380
Query: 181 tgttcttccattgttcccctctccctggtctccagagtggcaggtgaaggtggtgaccag 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgttcttccattgttcccctctccctggtcttcagagtggcaggtgaaggtggtgaccag 440
Query: 241 cactttccactccagtacactgcacagtaataaggaaagccgctgaagcctatgtagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactttccactccagtacactgcacagtaataaggaaagccgctgaagcctatgtagcta 500
Query: 301 ctcatggttctcaccctcttctacactgggacactgtgaacaagcaagcatgcacagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcatggttctcaccctcttctacactgggacactgtgaacaagcaagcatgcacagcag 560
Query: 361 ctatagctgagagcaagtctggtgaactcagcaaacccactgaaggaaatcctgacactc 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ctatagctgagagcaagtctggtgaactcaacaaacccactgaaggaaatcctgacactc 620
Query: 421 tggggagccttgcactgatacagaacactcaggagtgattagagaaatgggctctggacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggagccttgcactgatacagaacactcaggagtgattagagaaatgggctctggacc 680
Query: 481 tcttgtttgaagacacccttttaacttaaacctgggctatcagactcaggttcacaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttgtttgaagacacccttttaacttaaacctgggctatcagactcaggttcacaaaat 740
Query: 541 accatgatgagaactacacatctcccacctg 571
|||||||||||||||||||||||||||||||
Sbjct: 741 accatgatgagaactacacatctcccacctg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_f13.g1 MSMg01no473_f13.g1 CHROMAT_FILE:
MSMg01no473_f13.g1 PHD_FILE: MSMg01no473_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:23 2005
(499 letters)
>mm_chr3_143757514_143758416
Length = 903
Score = 870 bits (450), Expect = 0.0
Identities = 489/504 (97%), Gaps = 6/504 (1%)
Strand = Plus / Minus
Query: 1 aacctcttgacacctgtttggctacactgtattaattcctacagaattccatgaaagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aacctcttgacacctgtttggctacactgtattaattcctacagaattccatgaaagaga 644
Query: 61 gctctccatattctctagactgtaggtaaggacataaataatcatgacaagtgtgccata 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 643 gctctccatattctctagactgtaggtaaggacataaataatcatgacaaatgtgccata 584
Query: 121 gagtatcccacaacattggctgccttcgatgagttaagttagggttgttcgccagaggag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 583 gagtatcccacaacattggctgccttcgatgagttaaggtagggttgttcgccagaggag 524
Query: 181 gaccatggatttcatgtggccttgtctctgttactgtga-ctggacatgccatggagttg 239
|||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||
Sbjct: 523 gaccatggatttcatgtggccttgcctccgttactgtgacct-gacatgccatggagttg 465
Query: 240 caacagacaaacccagcttgtcacggattgatgacagtgaactgaaacaactggtcctgt 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 464 caacagacaaacccagcttgtcacagattgatgacagtgaactgaaacaactggtcctgt 405
Query: 300 cacttatctagtaagagtgattagcagcttaccagaactcaaaattccacagactctctg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 404 cacttatctagtaagagtgattagcagcttaccagaactcaaaattccacaggctctctg 345
Query: 360 ggatttctcagttcttaggccttcagggcccttacagaggctgcaacataagtgatctga 419
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 344 ggatttctcagttcttaggccttcagggcccttacagaggttacaacataagtgatctga 285
Query: 420 catcaacaggtctcctctatgacatgacttggttcttggctttttga----ttttttccc 475
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 284 catcaacaggtctcctctatgacatgacttggttcttggctttttgatttcttttttccc 225
Query: 476 ctcggagatgcagaaatgatggtg 499
||||||||||| ||||||||||||
Sbjct: 224 ctcggagatgctgaaatgatggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 903
Length adjustment: 10
Effective length of query: 489
Effective length of database: 893
Effective search space: 436677
Effective search space used: 436677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
