BAC Information

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BAC

Clone NameMSMg01-473G23
Chromosome3 (Build37)
Map Location 52,288,971 - 52,289,397
singlet/doubletsinglet
Overlap genenone
Upstream geneRab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473G23.T7 (MSMg01no473_g23.b1)MSMg01-473G23.TJ (MSMg01no473_g23.g1)
ACCAG555735AG555736
length771832
length of high quality
(start - end)
428 (75 - 502)292 (80 - 371)
definitionCHROMAT_FILE: MSMg01no473_g23.b1 PHD_FILE: MSMg01no473_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:31 2005CHROMAT_FILE: MSMg01no473_g23.g1 PHD_FILE: MSMg01no473_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAACATTTACACCCAGTCCGGCAGTGCACAGTGCTTACAT
ATTGGATCCTCGTGTTGGCTGCTTATGGTGTGAACTTTCAAGGATATGCA
AATGCAAGTATCCAATAGACATCAGAGTTGAGTTCCATAGTTCTGCCACG
GGGTGAGGTAGGAGTTAAACAACACGGGAGAACTTGCCTTTTATTTTTCC
CTGTGCTGGCAATAGCAGCCTGTCTGTTGGTTAGTGGGAGACAGATGAGG
AAATGGGACACAAAATGATCACCAAGATTCTGTGAGCAGAAGAGACTGAG
CAGAAAAGACAAAGCAGAGCAGAGGAAGGCTAGAGGTGCTGGGTTATGGG
TGGCCCAGGCAGCTGCTGTAGTTTGGAGCTGTCTGTCTTCCAAGTGTCTG
AATATTGGAGGCTTAGTCCTTAGCCTGCCGGTTGTGAGGTGGCCTGGGTG
GNGAACATCTAGGGGGCCGATGATGGCTCACTAGGTAAAGCACTTACTTT
GTAAGTGTGAGGGTCTGAGTTTGGATCCCCAGAACCTAAATAAAAGATAT
CCATTCTGTGTCTGCCCACGTGTGCTGGGTGGCACTGCCACATACCTTTT
AATTCCCCCCTTGGTAAGTTATATTATTTTGGTCTTCAGATATTTACGCT
TGTTTTGTTTTATCGGCTTCTCTCATTGTGTTGATCTTTTGTATCACTAC
AAAAACGCATCCTCGACTCTC
TTCTCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTCTCTCTGAGCCTTTGC
AAAGGCAATGCAGGTGTGTTTCATTGTGCATTGTTTAAATCGAGGAATGT
GAGACTCAACTGACTTTCGAAGAATATGATAGTTGATCTTATCAGCTTGA
CAGGATCCAATCTCCCAGGAGACACATCTCTGAGTGTGTCCATCAGGATG
TTCCCAGGAAGGTTTAAGGAAGGAAGGAAGACCCACTGTGAATGTAGGGG
ATATTATCCAGCAGCTGGAATACTGAACTGATTGAAAAGAAAAGGAGAGG
AGAAGAGAGAAGAGAAGAGGTTTATTCTTCCTCCTCCTTTCTTTTGTTCC
TATTCTCCCACTTTGTCATCCATTTTCGTCCTTTTACTGTTACTCACATA
CTTTCTTTTCCGTTTTTTATCCTTTCTTACCTTTTTCTTTCTTCTTTTTT
TTTATCTTTCTTTTTTCTCTCTATTTTCACTTTATCTTTTTCTCCTCTAT
CCCTTCTTCTTCTTATATTTATTGTTTATTGTTCTTATCTTTCCCTCTTC
ACTTTCTTCTTTCTCATTTCCCTATATTTTTCTCATTGCCTTCTTATTAT
ACTCTTTAATATTTTCTTTTCTTCTCTCTTAACGCATCATCCCTTCCTTC
CCCTCTACGATTTTCTTTTTCTCATGTTTCCCTTCCCTTTTTTTTTATTT
CCCATACCCTATAATTTCCTATACTTTCTTTATCTCTAATCTCCTTCATT
GCCTACCAACCTGTATTTTTGCTTTCTCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_g23.b1 MSMg01no473_g23.b1 CHROMAT_FILE:
MSMg01no473_g23.b1 PHD_FILE: MSMg01no473_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:31 2005
         (428 letters)



>mm_chr3_52288771_52289598
          Length = 828

 Score =  795 bits (411), Expect = 0.0
 Identities = 423/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccggcagtgcacagtgcttacatattggatcctcgtgttggctgcttatggtgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccggcagtgcacagtgcttacatattggatcctcgtgttggctgcttatggtgtgaa 260

                                                                       
Query: 61  ctttcaaggatatgcaaatgcaagtatccaatagacatcagagttgagttccatagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ctttcaaggatatgcaaatgcaagtatccaatagacatcagagttgagttccatagtcct 320

                                                                       
Query: 121 gccacggggtgaggtaggagttaaacaacacgggagaacttgccttttatttttccctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacggggtgaggtaggagttaaacaacacgggagaacttgccttttatttttccctgt 380

                                                                       
Query: 181 gctggcaatagcagcctgtctgttggttagtgggagacagatgaggaaatgggacacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggcaatagcagcctgtctgttggttagtgggagacagatgaggaaatgggacacaaa 440

                                                                       
Query: 241 atgatcaccaagattctgtgagcagaagagactgagcagaaaagacaaagcagagcagag 300
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatcaccaagaaccagtgagcagaagagactgagcagaaaagacaaagcagagcagag 500

                                                                       
Query: 301 gaaggctagaggtgctgggttatgggtggcccaggcagctgctgtagtttggagctgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggctagaggtgctgggttatgggtggcccaggcagctgctgtagtttggagctgtct 560

                                                                       
Query: 361 gtcttccaagtgtctgaatattggaggcttagtccttagcctgccggttgtgaggtggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcttccaagtgtctgaatattggaggcttagtccttagcctgccggttgtgaggtggcc 620

                  
Query: 421 tgggtgg 427
           |||||||
Sbjct: 621 tgggtgg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)