Query= MSMg01no473_j08.b1 MSMg01no473_j08.b1 CHROMAT_FILE:
MSMg01no473_j08.b1 PHD_FILE: MSMg01no473_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:43 2005
(553 letters)
>mm_chr3_78615588_78616539
Length = 952
Score = 946 bits (489), Expect = 0.0
Identities = 531/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 9 ggaattctccttgtctgttcccttggactccacattaggttttttagatgcttgacttgc 68
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 209 ggaattctccttgtctgttcccttggactccactttagggtttttagatgcttgacttgc 268
Query: 69 agcacacttgtatattactatgggaaccggattcagcttgaaatataagataatattcaa 128
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 269 agcacacttgtatattactatgggaaccagattcagcttgaaatataagataatatccaa 328
Query: 129 ccctgtatgcagaaacccttcctgggctgcagcgaagccatgatcagcctgttacggcca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccctgtatgcagaaacccttcctgggctgcagcgaagccatgatcagcctgttacggcca 388
Query: 189 ggccattagaggtgattttcagagttctctggatcagggggaagggaggttgcatggaag 248
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 389 ggccattagaggtgattttcagagttctctggatcagggg-aagggaggttgcatggaag 447
Query: 249 aaaaagtattccgcaccccagagtctcttgcttctgtgctgtgtttcatcattgatccta 308
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 448 aaaaagtattccgcaccccagagtctcttgcttctgtgctgtgcttcatcattgatccta 507
Query: 309 tgtatttccatgttaatgtatttaagaaaaatgccatcgcaatttagactcaagaaattt 368
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 508 tgtatttccatgttaatgtatttaagaaaaatgccattgcaatttagactcaagaaattt 567
Query: 369 ctgattcaattgcactctaaaaattttaaattcagaccttctttaaagatctagaacaaa 428
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 568 ctgattcaattgcactctaaaaattaaaaatccagaccttctttaaagatctagaacaaa 627
Query: 429 agtaagtcatcagaggtaggaacatatcagcccccaagactatctcaacttcaatgcctg 488
|| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 628 agaaagtcatcagaggtaggaacatatcagcccccaagattatctcaacctcaatgccta 687
Query: 489 ttaaacgctactaattaattctaacaacctcattaagaatcattgatttcaacaatttct 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttaaacgctactaattaattctaacaacctcattaagaatcattgatttcaacaatttct 747
Query: 549 tctta 553
|||||
Sbjct: 748 tctta 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_j08.g1 MSMg01no473_j08.g1 CHROMAT_FILE:
MSMg01no473_j08.g1 PHD_FILE: MSMg01no473_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:43 2005
(470 letters)
>mm_chr3_78799766_78800635
Length = 870
Score = 609 bits (315), Expect = e-178
Identities = 327/331 (98%)
Strand = Plus / Minus
Query: 139 cttttcacagcaatggaacactgatcaagacataaagacactgcataaaaacaatcagaa 198
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 870 cttttcacagtaatggaacactaatcaagacataaagacactgcataaaaacaatcagaa 811
Query: 199 gtatgttttaaatagagtcaagttgacattcatgatttgtagtagttacttgtctggctg 258
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 810 gtatgttttaaatagagtcaagttgacatccatgatttgtagtagttacttgtctggctg 751
Query: 259 ccttaaccaataacctgacaggagcatcttaggaaaggaaggatttcttttggctcacac 318
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 750 ccttaaccaataacctgacaggagcatcttaggaaaggaagggtttcttttggctcacac 691
Query: 319 tctgagggatcatggttgagatcatctgtaaaatacttgctgtataagcctgaagatttg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tctgagggatcatggttgagatcatctgtaaaatacttgctgtataagcctgaagatttg 631
Query: 379 aatttgactctctagcatccacatacatgttaggcatgatgatgtgtgtctgtacccaga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatttgactctctagcatccacatacatgttaggcatgatgatgtgtgtctgtacccaga 571
Query: 439 aatgagagagagatagggagggggaggggag 469
|||||||||||||||||||||||||||||||
Sbjct: 570 aatgagagagagatagggagggggaggggag 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
