BAC Information

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BAC

Clone NameMSMg01-474A24
Chromosome3 (Build37)
Map Location 7,008,978 - 7,009,448
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474A24.T7 (MSMg01no474_a24.b1)MSMg01-474A24.TJ (MSMg01no474_a24.g1)
ACCAG556213AG556214
length760764
length of high quality
(start - end)		473 (48 - 520)465 (78 - 542)
definitionCHROMAT_FILE: MSMg01no474_a24.b1 PHD_FILE: MSMg01no474_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:22 2005CHROMAT_FILE: MSMg01no474_a24.g1 PHD_FILE: MSMg01no474_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAAAATAGATCAGGGCATCTTAAGAGCCAGAGAGACTAGAG
AGGCTGCACCAGTGAGCACTCTTAAAGGGGCCTCGCACATTTACCTCCAG
AAGAGGTACTGCCCTTTCTGTTAGTTTGTACACAATTTTACATTCAAATG
AAAACAATTATTCATGTGCATCTGGAATAAAGCAGGTCCACCCATTGTTT
AATGCGGTTTCGCCCACAATTCTGAAAGAAAGATACAGTGGCTACATATG
TATCTCATTGCTGTTATTTTCCCACAGACAATGCCTGACATTACATCTCT
GACATTCAACCTTCTCTCAAGACTCACCCAAGTGGACTACAGAGCATCAT
AAGTGTGGCAAATAATGGTCATTATTTTAAAGGCACAGAATTAGAGTGAC
AGAAAACTGGAATTTTTTTAAATGGGTGTCTAGTATGTAGGATCTAATCA
ACACCATCTGACATCCGAAGGTAGGATATATTTGGTGAGCAAAATCCTTG
ACAGATTTTCTTTTAAGTGTGAAATAAAAGCCTGGTGTTCAAAAGAAGCC
CCAGGACTATTGGAAATCTGACTGACTGGTTTAGACTGGGNCAAAAGAGA
TATATGAAGGTGTCACCTTTTACAGCACTCCCGGAGAACCCCGAAAAAAA
CCAAAAAACCAACCAAAAACCGGAACAACAAACCAAAAAACCCCCCCAAA
CAAAAAAAAT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCATAGCAATTTAGTGAGAA
GCAATGAGAGAAGCCAATTTGAATCAGTTAGCTTGGAGAAGTGTTTGAGC
CATAACATCTGAGTTAAACCAGCTATCCAGAGTTTAGAAAGAAATGGAAG
AGGTAAGCTTATTCATTAGTAAGCCTCCAAGATAAGAATTATATCTGAGG
AAATAAAAGTGAAATTTAACATCACAGAAGAAAATTTTTGAACAGAACAT
CAATAGCTCAGGCTCTAAGACTGACAATTTATAAATGGGACCAAATGAGC
TGCAAAGCTTCTGCAAGGCAAAGGAAACTGTTAAGAAGACAAAATAGCAG
TCTACAGAATGGGAAAATATTTTCACTACCTCTACATATGACAGACAGTT
AATAACCAAAATACAGAAAAACCTGAGAAACTATACATCAACAATCTACA
CATCTAATTTGAAAACTGGGCTAAGGATCCATACTGGCTGGTCTTGTGTG
TCAACTTGACACAAGTTGGAGTTATCACAGAGAAAGAAGCGTCCCCTTGA
GGAAATGTCTCCCTGAGAACCAGCTATAAGACATTTTCTCCATTATGGAT
CCAGGATGGGGAGGGCCCCTTGGCAGGGGGGCCCTCCCCGGGGCTGGGGG
CCCTGATTTCTATTTAAAAAAAAGCCGGCCCATAAAAAAGAAGTGGGGAA
AAAATGGGGCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_a24.b1 MSMg01no474_a24.b1 CHROMAT_FILE:
MSMg01no474_a24.b1 PHD_FILE: MSMg01no474_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:22 2005
         (473 letters)



>mm_chr3_7008774_7009648
          Length = 875

 Score =  833 bits (431), Expect = 0.0
 Identities = 461/471 (97%), Gaps = 2/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaaata-gatcagggcatcttaagagccagagagactagagaggctgcacc 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaaagaggatcagggcatcttaagagccagagagactagagaggctgcacc 264

                                                                       
Query: 64  agtgagcactcttaaaggggcctcgcacatttacctccagaagaggt-actgccctttct 122
           ||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||
Sbjct: 265 agtgagcactcttaaaggggcctcgcacatttacctcaagaagagataactgccttttct 324

                                                                       
Query: 123 gttagtttgtacacaattttacattcaaatgaaaacaattattcatgtgcatctggaata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttagtttgtacacaattttacattcaaatgaaaacaattattcatgtgcatctggaata 384

                                                                       
Query: 183 aagcaggtccacccattgtttaatgcggtttcgcccacaattctgaaagaaagatacagt 242
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 385 aagcaggtccacccattgtttaatgtggtttcgcccacaattctgaaagaaagatacaat 444

                                                                       
Query: 243 ggctacatatgtatctcattgctgttattttcccacagacaatgcctgacattacatctc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctacatatgtatctcattgctgttattttcccacagacaatgcctgacattacatctc 504

                                                                       
Query: 303 tgacattcaaccttctctcaagactcacccaagtggactacagagcatcataagtgtggc 362
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 tgacactcaaccttctctcaagactcacccaagtggactacagagcatcttaagtgtggc 564

                                                                       
Query: 363 aaataatggtcattattttaaaggcacagaattagagtgacagaaaactggaattttttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaataatggtcattattttaaaggcacagaattagagtgacagaaaactggaattttttt 624

                                                              
Query: 423 aaatgggtgtctagtatgtaggatctaatcaacaccatctgacatccgaag 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgggtgtctagtatgtaggatctaatcaacaccatctgacatccgaag 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space:   400495
Effective search space used:   400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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