BAC Information

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BAC

Clone NameMSMg01-474C19
Chromosome3 (Build37)
Map Location 22,450,945 - 22,451,284
singlet/doubletsinglet
Overlap genenone
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC100040378, LOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474C19.T7 (MSMg01no474_c19.b1)MSMg01-474C19.TJ (MSMg01no474_c19.g1)
ACCAG556298AG556299
length708738
length of high quality
(start - end)
243 (74 - 316)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no474_c19.b1 PHD_FILE: MSMg01no474_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:32 2005CHROMAT_FILE: MSMg01no474_c19.g1 PHD_FILE: MSMg01no474_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGATCCG
CGGAATTCGTTGTTCTCATAACTGAGTGGTACTCCAGTGTGTAAATGTAC
ATTTTCTGTATTCATTCCTCTGTTGAGGAGCATCTGGGTTGTTTCTAGCT
TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCT
TGTTATATATTGGATCATCTTTTGGCTATATGCCCAGGAGTGGTATAGCT
GGGTCCTCATGTAGAACTATTTCCAATTTTCTGAGGAACTGCCAGACCGA
TTTTCAGAGTGGTTGATTTTTTCTTGCAATCCCACCAGCAATAAAGGAGT
GGTCCTCTTTCTGGACGTCCTCACTAGCATCTACTGTCACCTGAGCCTTA
CACTTCATATTTTTAAAAGGCTTAATTTACAAATATTTGAATCATCTAAA
ATCATACTGCATACACTCAACTTCAGAATACTTTAGCAGTATATCTTTGA
GTTCTGAGAGGGGACTTGTAGTATCCACTTCCAGTTGAAAGACATGGAAT
TAAGTATAGGGATGGGGCTTATATCCCACAGTCCATAACTCTGACTCCAA
ATTGTTCCCCGTCTAAAATAATGCACGGGATAAATTTGGACAAAATATTG
ATAATAAAGGAGGTCCCCGGGGCTTGGGCCCAACTTTGAAATCCCTTCTC
CCGAAGGA
GGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAAAAAAAACACACACTTTGCTA
GAAGAATAAATGGTTACAATTACAAGATTATGTTACTGCCACCAATTTAA
TCAGCTTTTGGAGACCTAAGCCTTCTTCCATCTTAATTTCAATTTATTAT
TAACAGGGGGCCATCTTCACATTGGTGTACTCACTTTATCTAATAGAGAA
TTTTTCATCTAATTGATTCCAAATTTATCATATAAATGTCAAAGCCAAAT
TTTCCTTTAATAACCCATTATCTTTCAGTTCTGGCTCAGTGAACACATAA
GAAATGGCATCATAATCCTTCCTGGGAAGGTGAGGGATAGCAACCTAATT
ATCCTACTTACAAGGAAAATACAGGTACCTTTTAAAAGTAATAAATCTTG
AGTATATTTTCTTAATTTTGGCACATTTCTCATTGGTTAAGATAGATCAT
CTTATCTTATTATTAGCAAGAGAATGAGCTTTAGTTAAAAGGAAAGAATG
AGCCCCTTGAAGTTCAAAAAACCTTTGGAAAAAAAAAAGGGGTTGGAAAA
GGGGGCCCTTTTAAAAGGGAAAAAAACCTCTCTTTTGGCACCCCTTAAAT
TTTCCCAACCAATTTTTTATAAAACCTTTTTCCCTCGGGGGCCTTTTAAA
ATTTTTTTTAAGGGGCACAAAAAAAGGGGGGACAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_c19.g1 MSMg01no474_c19.g1 CHROMAT_FILE:
MSMg01no474_c19.g1 PHD_FILE: MSMg01no474_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:32 2005
         (339 letters)



>mm_chr3_22450745_22451484
          Length = 740

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/342 (97%), Gaps = 5/342 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaaaaaacacacactttgctagaagaataaatggttacaattacaagattatgttac 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaaaaaaaaacacactttgctagaagaataaatggttacaattacaagattatgttac 260

                                                                       
Query: 61  tgccaccaatttaatcagcttttggagacctaagccttcttccatcttaatttcaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaccaatttaatcagcttttggagacctaagccttcttccatcttaatttcaattta 320

                                                                       
Query: 121 ttattaacagggggccatcttcacattggtgtactcactttatctaatagagaatttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattaacagggggccatcttcacattggtgtactcactttatctaatagagaatttttc 380

                                                                       
Query: 181 atctaattgattccaaatttatcatataaatgtcaaagccaaattttcctttaataaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctaattgattccaaatttatcatataaatgtcaaagccaaattttcctttaataaccc 440

                                                                       
Query: 241 attatctttc---agttctggctcagtgaacacataagaaatggcatcataatccttcct 297
           |||||||  |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatct--ccacagttctggctcagtgaacacataagaaatggcatcataatccttcct 498

                                                     
Query: 298 gggaaggtgagggatagcaacctaattatcctacttacaagg 339
           || |||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaaaggtgagggatagcaacctaattatcctacttacaagg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space:   241230
Effective search space used:   241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)