BAC Information

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BAC

Clone NameMSMg01-474D18
Chromosome3 (Build37)
Map Location 75,630,512 - 75,630,830
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D18.T7 (MSMg01no474_d18.b1)MSMg01-474D18.TJ (MSMg01no474_d18.g1)
ACCAG556344AG556345
length715731
length of high quality
(start - end)
550 (72 - 621)319 (327 - 645)
definitionCHROMAT_FILE: MSMg01no474_d18.b1 PHD_FILE: MSMg01no474_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:36 2005CHROMAT_FILE: MSMg01no474_d18.g1 PHD_FILE: MSMg01no474_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXATTTTCACAACAGCCGCGGAA
TTCCCTAACTTATCAAAGAAAAATCCTTATTTGGTTAAGACTGTCCTTAC
TGTCCTAGTAAACATTCTGCACACCTGCCCTGAGCTGCAGGCTCCGTCTT
TTGTAATGCTAATTAGTTACTGAATAGGTAACTTCCTTACTGAATTCCAA
GTTGTTGGCTTCAAGGTCTTTCTGGGATATTGGAACACTGGTGAAGGCTT
AACTATATCAGAATTCAATCTTAAAAGGCACTTAAGGCTTAACTATATCA
GAATTCAATCTTATTGGTACTTTTAATAAGATAATACTAAAGGAGAGCAC
GTGCATCCATACAACAGACTAACGCGGGGATAGGGTAAGAATGTACGGGT
TATGAGAATGCCAAAGTTCCAGGAGGTGAGCATCCATGAAACTCTTTGCC
TCATGAGTGCTCCCAGGCCTCTCCACCTACCAAGCAAACTTCACTGGAGT
GTGCATAGCATTCTCCCATTCTTATATTTTTGCTGAAGTTCCAGAATGTC
CCACCTTGTCATAGCTATAGATCTTAGGAGTGCTCTAAAGATGAGTGGAA
ACAACAATTTACTAATAAAATAGTGCCAATAATAATAGCAAGTATGATAA
TATATTGAACCCAATCCAGGGGATTCAATGCACTTAGGTTATCTTTAAAT
CTCTGGTCAATTCAT
CGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCGACAATTCTTAATAGGTTATAAAATAAGGAATCT
TCCCATGAGTTTTGGGTATTCAAATTCTGCTTCACACTGAACTACCAAGT
ATCCACTGAACCATCTCCCCAGCCCACAGAGTACATATTTTGTTGGTACA
TATTTTGTAAAATAATACGTCAATAATTTTTTTAGCTTCTAATTTGTAAG
CTATGATAAGGAAGATCTTCCCACCTTATGAAATATTTCTTTAGAAGATC
TTCCCTAATTATTTACATANATTATTGTGTGGTACACATGCATGCATATG
TATTACATATATTTGTGTGTGGTACGTGTGCATGCATATGTACGTTTACA
TGTATGTAGAAAGCCAGGGTTAATGTTGGGAGTCATCCGTGATGACTCTT
TGACCTTGGCTTTTGATCAAGGGTCTCCCAATCAATCGGAAATTTCCCTG
AAATGGATATTCTCAGTCACCACATTGCTTGGGGATCCCTCTCACATTTA
CTCAGATTCACATCCATCCTGCATTCCCAGAAAGTACTTTAATCACTATT
ATTCCCAGATTCTCATGACCTTTCCAGATTTCTTTTCATATAATCAATTC
ATTCTTTAGTGTTCCCTGCATTGGATATATGTTTGAGGAGCCCAAAACAA
ATGAAATAATAGCACTCTTCTGAAAGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d18.g1 MSMg01no474_d18.g1 CHROMAT_FILE:
MSMg01no474_d18.g1 PHD_FILE: MSMg01no474_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:37 2005
         (319 letters)



>mm_chr3_75630140_75630858
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtggtacacatgcatgcatatgtattacatatatttgtgtgtggtacgtgtgcatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtgtggtacacatgcatgcatatgtattacatatatttgtgtgtggtacgtgtgcatgca 632

                                                                       
Query: 61  tatgtacgtttacatgtatgtagaaagccagggttaatgttgggagtcatccgtgatgac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 631 tatgtacgtttacatgtatgtagaaagccagggttaatgttgggagtcatctatgatgac 572

                                                                       
Query: 121 tctttgaccttggcttttgatcaagggtctcccaatcaatcggaaatttccctgaaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctttgaccttggcttttgatcaagggtctcccaatcaatcggaaatttccctgaaatgg 512

                                                                       
Query: 181 atattctcagtcaccacattgcttggggatccctctcacatttactcagattcacatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atattctcagtcaccacattgcttggggatccctctcacatttactcagattcacatcca 452

                                                                       
Query: 241 tcctgcattcccagaaagtactttaatcactattattcccagattctcatgacctttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcctgcattcccagaaagtactttaatcactattattcccagattctcatgacctttcca 392

                              
Query: 301 gatttcttttcatataatc 319
           |||||||||||||||||||
Sbjct: 391 gatttcttttcatataatc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)