BAC Information

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BAC

Clone NameMSMg01-474F14
Chromosome3 (Build37)
Map Location 87,425,335 - 87,425,898
singlet/doubletsinglet
Overlap geneArhgef11
Upstream geneLrba, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneEG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474F14.T7 (MSMg01no474_f14.b1)MSMg01-474F14.TJ (MSMg01no474_f14.g1)
ACCAG556432AG556433
length723738
length of high quality
(start - end)
564 (69 - 632)454 (75 - 528)
definitionCHROMAT_FILE: MSMg01no474_f14.b1 PHD_FILE: MSMg01no474_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:46 2005CHROMAT_FILE: MSMg01no474_f14.g1 PHD_FILE: MSMg01no474_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTTGGCTTTCCTGTGTTTTTTTCTAGTTTGGTCTTCACATGAACT
ACCTTTGTGCAGAGAAAAGCTGTTCTATAGATACAAACTCCTACCCTGCC
CAGCCCCAAGAACATTTACCCCGAGGTATTGGGCATAATCTCTATTTACA
ATACCAAACACATTTTCAGAAAATATTGAAATTAAGATGAAGGGCAAAAA
AGATATTATTTTTTACCCCTTCGAGGACAGGGGTAGCCACATCTCATCTC
ATCTCTTACAACCGATGATCTCAAAGAGAGAAATCATCCAAAAAAAAACG
CTCCATGACTCCCGTATGACTCAACATGACTTCCATGACTCAACAGGAGA
AAACTGATGTAAAAGGCTGCCAAACAGGTAGCCCAGGCTTTATTTAAGGC
ACACTCAGTCTCTAGCTATATGATCCTCCAGCCTGTCCTCTTATCTCCTA
GAAAATACGTAACGCCAAGGAAGTTTTTGCTGAAGTTTACCCTAGATTAA
CCACATAACCAAGTCATTAAAACAACTTTCGGTGGATGAATTCACACTTT
TTGGTAAGTTCACTTAACCTCAACACAAGTCTGGAGTGTTTACGGATCAC
TGACTGCATACCAAGCACTGACCTTAGCAGATAGGACAAAGCCAGCCAAA
CAACACAGCCCCTGCATTCAGAG
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGC
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATACAAA
TCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGTGGAAACAGAGGAAC
ACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTTTTTATAAAATTGGACATAGTACTACTGGAGGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAA
GGACACATGCTCCACTATGTAATGGGCCATCACTGGAACGAGAGGCCCAT
TGGACACGCAAACTGTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAA
AAAATGGGAATGGGTGGGTAGGGAGTGGNTTNTTTTNTTTTTTTTTCTTC
TTTTTTCCTTTTCTTTTCTTTTTTCTCTTCTTCTTTTTTTCTTCTTCTCT
CTTCTTTTTCCTCTTCTATTCTTCTTTCTCCTCTCCCTTTTTTTTTTTTT
TCTCTACTCCTACTTTACTCCTAACTCTTCTCTAATATTTCTCTTATTCC
TCATCTCTTATTGTCACTTTCCCTCCTTTTCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_f14.b1 MSMg01no474_f14.b1 CHROMAT_FILE:
MSMg01no474_f14.b1 PHD_FILE: MSMg01no474_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:46 2005
         (564 letters)



>mm_chr3_87425135_87426098
          Length = 964

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttttttctagtttggtcttcacatgaactacctttgtgcagagaaaagctgttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgtttttttctagtttggtcttcacatgaactacctttgtgcagagaaaagctgttctat 705

                                                                       
Query: 61  agatacaaactcctaccctgcccagccccaagaacatttaccccgaggtattgggcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agatacaaactcctaccctgcccagccccaagaacatttaccccgaggtattgggcataa 645

                                                                       
Query: 121 tctctatttacaataccaaacacattttcagaaaatattgaaattaagatgaagggcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tctctatttacaataccaaacacattttcagaaaatattgaaattaagatgaagggcaaa 585

                                                                       
Query: 181 aaagatattattttttaccccttcgaggacaggggtagccacatctcatctcatctctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaagatattattttttaccccttcgaggacaggggtagccacatctcatctcatctctta 525

                                                                       
Query: 241 caaccgatgatctcaaagagagaaatcatccaaaaaaaaacgctccatgactcccgtatg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caaccgatgatcacaaagagagaaatcatccaaaaaaaaacgctccatgactcccgtatg 465

                                                                       
Query: 301 actcaacatgacttccatgactcaacaggagaaaactgatgtaaaaggctgccaaacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 actcaacatgacttccatgactcaacaggagaaaactgatgtaaaaggctgccaaacagg 405

                                                                       
Query: 361 tagcccaggctttatttaaggcacactcagtctctagctatatgatcctccagcctgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tagcccaggctttatttaaggcacactcagtctctagctatatgatcctccagcctgtcc 345

                                                                       
Query: 421 tcttatctcctagaaaatacgtaacgccaaggaagtttttgctgaagtttaccctagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcttatctcctagaaaatacgtaacgccaaggaagtttttgctgaagtttaccctagatt 285

                                                                       
Query: 481 aaccacataaccaagtcattaaaacaactttcggtggatgaattcacactttttggtaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaccacataaccaagtcattaaaacaactttcggtggatgaattcacactttttggtaag 225

                                   
Query: 541 ttcacttaacctcaacacaagtct 564
           ||||||||||||||||||||||||
Sbjct: 224 ttcacttaacctcaacacaagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)