BAC Information

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BAC

Clone NameMSMg01-474H02
Chromosome3 (Build37)
Map Location 108,336,905 - 108,337,420
singlet/doubletsinglet
Overlap gene5330417C22Rik
Upstream geneUbl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars
Downstream gene1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474H02.T7 (MSMg01no474_h02.b1)MSMg01-474H02.TJ (MSMg01no474_h02.g1)
ACCAG556504AG556505
length733741
length of high quality
(start - end)
601 (47 - 647)508 (75 - 582)
definitionCHROMAT_FILE: MSMg01no474_h02.b1 PHD_FILE: MSMg01no474_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:54 2005CHROMAT_FILE: MSMg01no474_h02.g1 PHD_FILE: MSMg01no474_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTACCATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCATA
GAGAATGAAGACTGAAGTGTGGACCCTATGCCC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATGTTAATATTCTTCCCTCCCTCT
TAACCAGAACGGTGTCCAAGGCCTTCAATTCAATGTCTTATATGTCACAG
TGGACAAAGATCTAATGACAGGCGGCAGTTGTATGGTAGAATTCTTATCT
TCTACAAAGGAAATGACAGTGTTTAACACTTAGGCAAGGCAACTAGGCCA
CAGGCCACCAAGGCCAGTGAACCAAGGTCACTGGGAAGATCATCCTGTTC
ACGGTCATCTTTAAAATCTATTGTGAAGTGGCTCGGTAAAAATGTAGTTG
GTTATGGTCACGGCCAGGGTATTATTGGGCCTAGCAAAAGTTCTAAAAGG
CCCTCTGACTGGGGCCATTTTCCAGTGATTGCAGGGTTTTTTTTTTTCTG
TGTGTTCATACTATGTATATGGATATGGGCACACACATCCCACAGTGTGC
ACATGAAGGTCAGAGGATGATTCTGTGGGGCCTGTCTCTCACTATGGAGC
TTCGAATGACCTTGGATTTCTGGGCCTGCTGCCCCTACCTCCCAAGNGCT
AATATTACAGACAAAGGCCCCTCTATCTGGTTTACTCTGCATAGAGGATT
CAACCCCCAGGCTTTTCTGCTAAAGAGAGAACTTTGCCAATTCTCGCAAA
TGTGGCACTTTTTTAAACTCATACTTACCTCCTGCTTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_h02.g1 MSMg01no474_h02.g1 CHROMAT_FILE:
MSMg01no474_h02.g1 PHD_FILE: MSMg01no474_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:54 2005
         (508 letters)



>mm_chr3_108336712_108337620
          Length = 909

 Score =  917 bits (474), Expect = 0.0
 Identities = 502/516 (97%), Gaps = 8/516 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgttaatattcttccctccctcttaaccagaacggtgtccaaggccttcaattcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttatgttaatattcttccctccctcttaaccagaacggtgtccaaggccttcaattcaat 253

                                                                       
Query: 61  gtcttatatgtcacagtggacaaagatctaatgacaggcggcagttgtatggtagaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtcttatatgtcacagtggacaaagatctaatgacaggcggcagttgtatggtagaattc 313

                                                                       
Query: 121 ttatcttctacaaaggaaatgacagtgtttaacacttaggcaaggcaactaggccacagg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 ttatcttctacaaaggaaatgacagtgtttaacacttaggcaagacaactaggccacagg 373

                                                                       
Query: 181 ccaccaaggccagtgaaccaaggtcactgggaagatcatcctgttcacggtcatctttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaccaaggccagtgaaccaaggtcactgggaagatcatcctgttcacggtcatctttaa 433

                                                                       
Query: 241 aatctattgtgaagtggctcggtaaaaatgtagttggttatggtcacggccagggtatta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 aatctatcgtgaagtggctcggtaaaaatgtagttggttatggtcacagccagggtatta 493

                                                                       
Query: 301 ttgggcctagcaaaagttctaaaaggccctctgactggggccattttccagtgattgcag 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 494 ttgggcctagcaaaagttctaaaaggcccgctgactggggccattttccagtgattgcag 553

                                                                       
Query: 361 ggttttt--------ttttttctgtgtgttcatactatgtatatggatatgggcacacac 412
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggtttttatttttatttttttctgtgtgttcatactatgtatatggatatgggcacacac 613

                                                                       
Query: 413 atcccacagtgtgcacatgaaggtcagaggatgattctgtggggcctgtctctcactatg 472
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 614 atcccacagtgtgcacatgaaggtcagaggatgattctgtgaggcctgtctctcactatg 673

                                               
Query: 473 gagcttcgaatgaccttggatttctgggcctgctgc 508
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 674 gagcttcgaatgaccttggatttctggtcctgctgc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)