NTTTTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGTACCATACCGAATGGCTGAGAAGCACCTGAA
AAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGT
GACAGCAGATGCTGTCGAGGATGTAGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGTTTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTTCTGGAGGATCCCGCAATATTTCTC
CTGGGCATTTATCCAGAAGATGTTCCAACTAGTAAGAAAGATACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGTAATGGATACAAAAAATGTGGTACATATAC
ACAATGGAGTACTACTCAGCTATTTAAAAAGAATGAATTTATGAAATTCC
TAGGGCAATGGGTGGACCAGGTGGCCATCATCCTGAGTGAGGTAACCCCA
TCACAAAAGAAATCCCATGATATGGACTCCCTGATAAGTGGATATTAGCC
CCCAAACTTTAAATACCCCCGAAATAAGAAAAAATTTTGCTAAACCCCTG
GAATCCCCTAAAGGAGAACCCAAGGGGGGATC

NNGGCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAATTACTTTATATGCTTCACA
GGGGATTCTTATATATAATTTGGTTTGGAAAATCTTTCAAAGTTTATTAA
GCAGTCATTAAGTCTTATTGGACCTTCTCTTAACTAAAAACTTTTATTTT
GGAGCAAACTTAAAATTGAAGCTAAAAGTCAACTGAGAAATCATTTTTCG
TTGAGATTATTAAGATGGCATATAGTCTTATGGTCTTCAGCAGGGAATAC
TTTTTATCCTAAATGAGATTGTTCTGGTATTAACAATTAACATCTTAAAT
TAATATTTTGAGCAACATTCTCTAAAAAATATAGTGAAAATATTCTTTAG
AATCTGGTTTCAAGTAATCAGTGTAAGAAAACTCATACATACTTAAAAGC
CATAATGTTTCAAATGTGGGGAAATGTATAATAATCTTTTTATTTTAGAT
ATGTTCCAGACCAAAAAGAACATAGATCCCAGTTCAAGAGGGGTTTCATG
CAGGGTCATGTAAATAGACNAGAAAAAGAAGAANAAGAGGCCATCTATAA
GGAACGCTGGCCAGCGTATATAAAGGAACTGCGGACCAGGTAAGTCTGTT
TGAGGTATGCACCCCTCGGCTGAAGCAAGTAGGACTCCTTCGGAAAAGAG
GGGACTTGGACCCCAGCN

Query= MSMg01no474_k16.g1 MSMg01no474_k16.g1 CHROMAT_FILE:
MSMg01no474_k16.g1 PHD_FILE: MSMg01no474_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:12 2005
         (508 letters)



>mm_chr3_62292676_62293583
          Length = 908

 Score =  909 bits (470), Expect = 0.0
 Identities = 498/509 (97%), Gaps = 4/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaattactttatatgcttcacaggggattcttatatataatttggtttggaaaatctt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 707 aggaattactttatatgcttcacaggggattcctatatataatttggtttggaaaatctt 648

                                                                       
Query: 61  tcaaagtttattaagcagtcattaagtcttattggaccttctcttaactaaaaactttta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 647 tcaaagtttattaagcagtcattaagtcttattggaccttctcataactaaaaactttta 588

                                                                       
Query: 121 ttttggagcaaacttaaaattgaagctaaaagtcaactgagaaatcatttttcgttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttttggagcaaacttaaaattgaagctaaaagtcaactgagaaatcatttttcgttgaga 528

                                                                       
Query: 181 ttattaagatggcatatagtcttatggtcttcagcagggaatactttttatcctaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttattaagatggcatatagtcttatggtcttcagcagggaatactttttatcctaaatga 468

                                                                       
Query: 241 ga--ttgttctggtattaacaattaacatcttaaattaatattttgagcaacattctcta 298
           ||  |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaagt--ttcaggtattaacaattaacatcttaaattaatattttgagcaacattctcta 410

                                                                       
Query: 299 aaaaatatagtgaaaatattctttagaatctggtttcaagtaatcagtgtaagaaaactc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaatatagtgaaaatattctttagaatctggtttcaagtaatcagtgtaagaaaactc 350

                                                                       
Query: 359 atacatacttaaaagccataatgtttcaaatgtggggaaatgtataataatctttttatt 418
           |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggcatacttaaaagctataatgtttcaaatgtggggaaatgtataataatctttttatt 290

                                                                       
Query: 419 ttagatatgttccagaccaaaaagaacatagatcccagttcaagaggggtttcatgcagg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttagatatgttccagaccaaaaagaacatagatcccagttcaagaggggtttcatgcagg 230

                                        
Query: 479 gtcatgtaaatagacnagaaaaagaagaa 507
           ||||||||||||||| |||||||||||||
Sbjct: 229 gtcatgtaaatagacaagaaaaagaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)