Query= MSMg01no474_o14.b1 MSMg01no474_o14.b1 CHROMAT_FILE:
MSMg01no474_o14.b1 PHD_FILE: MSMg01no474_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:31 2005
(468 letters)
>mm_chr3_49770613_49771480
Length = 868
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%)
Strand = Plus / Minus
Query: 1 tttgaaatctaaagatgtggaaacccatctttctcagatagtttactcttggtctttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttgaaatctaaagatgtggaaacccatctttctcagatagtttactcttggtctttaaa 463
Query: 61 agagtaggtcctcacaagggtattaaaaatattttacctgatttcattaatccattcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agagtaggtcctcacaagggtattaaaaatattttacctgatttcattaatccattcccc 403
Query: 121 tttgtttctttttggaaggaaacactacctatgtccacccacatcctttcttacaaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttgtttctttttggaaggaaacactacctatgtccacccacatcctttcttacaaatac 343
Query: 181 ttttacatgtacaactatagtacagacttataagatgaaataaatgcttctaactgccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttttacatgtacaactatagtacagacttataagatgaaataaatgcttctaactgccat 283
Query: 241 gtattgttaggcaagctagcatgaatctaacaagttaacctggtgtgatgatcttccagg 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtattgacaggcaagctagcatgaatctaacaagttaacctggtgtgatgatcttccagg 223
Query: 301 gttccagtctgtcactgggctgcctttctttcttccttccttccttccttccttccttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gttccagtctgtcactgggctgcctttctttcttccttccttccttccttccttccttcc 163
Query: 361 ttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 103
Query: 421 ttccttccttccttccttcctttctttctttctttctttctttct 465
|||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 102 ttccttccttcctttctttctttctttctttctttctttctttct 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_o14.g1 MSMg01no474_o14.g1 CHROMAT_FILE:
MSMg01no474_o14.g1 PHD_FILE: MSMg01no474_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:31 2005
(553 letters)
>mm_chr3_49562928_49563880
Length = 953
Score = 1040 bits (538), Expect = 0.0
Identities = 550/554 (99%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 caaagacatctaagtctatcagtttgaggactttcatctgtgaatgtgataagcatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagacatctaagtctatcagtttgaggactttcatctgtgaatgtgataagcatactg 260
Query: 61 ccacaacgcatgccttggcttggtcatcttcatttatgggatgcgtcttacatttgctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaacgcatgccttggcttggtcatcttcatttatgggatgcgtcttacatttgctta 320
Query: 121 gagcaccatgctttagcaaatctttctcttcctccaggcagtgtgcttgcccataaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaccatgctttagcaaatctttctcttcctccaggcagtgtgcttgcccataaatat 380
Query: 181 tatgaaaatgacttcatcttccaaggtattcaccataaattgacaggtgagatgtggcct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaaaatgacttcatcttccaaggtattcaccataaattgacaggtgagatgtggcca 440
Query: 241 tttct-aatgtgtttctgtgcttatgactctagcaatcttggaatcatctcgcggatgct 299
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tt-cagaatgtgtttctgtgcttatgactctagcaatcttggaatcatctcgcggatgct 499
Query: 300 tgcaatctctttacacttagagcagaggctaatgtcttcctgagtggtttacatagctac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcaatctctttacacttagagcagaggctaatgtcttcctgagtggtttacatagctac 559
Query: 360 ttggtctgggatagaatctatggggacatgatacctcacccctttaatctaagcacttgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttggtctgggatagaatctatggggacatgatacctcacccctttaatctaagcacttgg 619
Query: 420 gaggcaagtggaactctatgagttcaaagccagcttcgtctgcattgcaaatcaccattc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaggcaagtggaactctatgagttcaaagccagcttcgtctgcattgcaaatcaccattc 679
Query: 480 agtaagagctataaaaggaaacaataatatatctcttttatatgtttcattaattctaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtaagagctataaaaggaaacaataatatatctcttttatatgtttcattaattctaac 739
Query: 540 aattatttcttaca 553
||||||||||||||
Sbjct: 740 aattatttcttaca 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
