BAC Information

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BAC

Clone NameMSMg01-474P09
Chromosome3 (Build37)
Map Location 53,422,698 - 53,423,105
singlet/doubletsinglet
Overlap geneFrem2
Upstream geneLOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474P09.T7 (MSMg01no474_p09.b1)MSMg01-474P09.TJ (MSMg01no474_p09.g1)
ACCAG556899AG556900
length730739
length of high quality
(start - end)
507 (78 - 584)462 (72 - 533)
definitionCHROMAT_FILE: MSMg01no474_p09.b1 PHD_FILE: MSMg01no474_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:35 2005CHROMAT_FILE: MSMg01no474_p09.g1 PHD_FILE: MSMg01no474_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGATTTTTCCGACAGGGAGATCTCTGAGTTCAAGGTCATCT
GGGATTAAAGGCATGGTGGCACACACCTTTAATCTGGGCCACACCTTCTG
CTGGAGACCTACATAAGGACATTGGAAGGAAGAAGATTTACTCTCTCTAT
TCTTCACCTGCTTGCCTCGTGGGACTGAGCAACTGCTAGATCCTTGGACT
TCCATTCACAGCTGCTGCTGACCATTGTTGGGAGTTGGACTGCAGACTAT
AAGTCATCAACAAAGTCCTTTACTAGATAGAGACTACCCATAAGTCCCAT
GACTCTAGAGAACCCTGACTAATGCACTAAGACAATGCCATTCCTGAGAG
GTGGGGCCGGATCACTTTCTAGAAGCAGTGAGATTTATAACTGCAATGGT
GTGTTCTAATTTGATTGTCTTATTGCAGCAGCATCAGGCTGTGACCTCAA
GTTTAATAATTATCACTAAATCACTGATGTAGCCAGGAACTCGGGCATGG
TTCATATCAAGCATCTTAAGCCTGACTAAGACCTACATTTTAATTCTCTC
TGAACTTTCTTCAGCACTTACATCTGATAAAGCCTGATGGCTAAAACATG
TACACCTCGCAGAAATGTCACCTACAGGCCAGGCCTGCTTGGCAGAAAGT
AACCGATTTCTTCATGCCCGCTCCGGGAAG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCAAGCACAATTCCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTTAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCATATATTAAACCATCCCTGCATCCTTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAACGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTTTTGAGTTTTTTCTTATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGT
GGCTTCATAAAATGAGTTGGATAGAGTACCTTCTACTTCTATTTTGTGAA
ATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGAGCTTTTTTTATTATTTTTTCTTCT
CTGGCTGGGAGATCACTAATAACTTGCTCCTATTTCTTCTACAGATTATG
CCACTTGGTTAAAACCTCAACTCTTTTCCCCCGACCACCCTTTTTTTTTT
TTGGCATCCCGCCCCAAATTCCTTTCTACTTCTTCTTCCCGTTTTTTCTA
ATCTTCTTTCCGCCCTCCCTCTCCTTTCTCCCTCATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_p09.b1 MSMg01no474_p09.b1 CHROMAT_FILE:
MSMg01no474_p09.b1 PHD_FILE: MSMg01no474_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:35 2005
         (507 letters)



>mm_chr3_53422199_53423105
          Length = 907

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 100 aggaagaagatttactctctctattcttcacctgcttgcctcgtgggactgagcaactgc 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 aggaagaagatttactctctctattcttcacctgcttgcctcgtgggactgagcaactgc 848

                                                                       
Query: 160 tagatccttggacttccattcacagctgctgctgaccattgttgggagttggactgcaga 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tagatccttggacttccattcacagctgctgctgaccattgttgggagttggactgcaga 788

                                                                       
Query: 220 ctataagtcatcaacaaagtcctttactagatagagactacccataagtcccatgactct 279
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 787 ctgtaagtcatcaacaaagtcctttactatatagagactacccataagtcccatgactct 728

                                                                       
Query: 280 agagaaccctgactaatgcactaagacaatgccattcctgagaggtggggccggatcact 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agagaaccctgactaatgcactaagacaatgccattcctgagaggtggggccggatcact 668

                                                                       
Query: 340 ttctagaagcagtgagatttataactgcaatggtgtgttctaatttgattgtcttattgc 399
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 667 ttctagaagcagtgagatttataactgcaatggtgtgctctaatttgattgtcttattgc 608

                                                                       
Query: 400 agcagcatcaggctgtgacctcaagtttaataattatcactaaatcactgatgtagccag 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agcagcatcaggctgtgacctcaagtttaataattatcactaaatcactgatgtagccag 548

                                                           
Query: 460 gaactcgggcatggttcatatcaagcatcttaagcctgactaagacct 507
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaactcgggcatggttcatatcaagcatcttaagcctgactaagacct 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)