BAC Information

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BAC

Clone NameMSMg01-475J09
Chromosome3 (Build37)
Map Location 38,483,622 - 38,483,855
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855
Downstream geneLOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J09.T7 (MSMg01no475_j09.b1)MSMg01-475J09.TJ (MSMg01no475_j09.g1)
ACCAG557378AG557379
length813789
length of high quality
(start - end)
74 (84 - 157)234 (79 - 312)
definitionCHROMAT_FILE: MSMg01no475_j09.b1 PHD_FILE: MSMg01no475_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005CHROMAT_FILE: MSMg01no475_j09.g1 PHD_FILE: MSMg01no475_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTCCCTAATTTGCTGACGCTAAANGACTCACTATATGCAGACAAT
CCGNGGAANNCTCGGATATTCCTGAATTAGCCTGAAAGAGAAATGGCCCC
GCAGGCTGGGGTCTTGGATTGTATGATCCCCAGCTTAGGAACTGTTTAGG
AAGATGCAGAGGCTTAAGGAAGCAGAGCTTTGCTAAAGGAAGTGAGTCAC
TGTGGGTGGGCCTTGAGGTGTGATAAGTCAGCCCCACTTCCTGTCCAATC
TCTGCTTTCTGTTTCCAGACACAATGTGACCAGCTGCCTAATATCACTAA
TGCCATACCCTCAATGCTATGACCATATTTGTCTCTGCGAGCCATAATAA
AGTCATCCCTCCTTGCTTGATTATGCTTGCGGACGCCGCGAACTCCTTCC
CTTTCCCCCCCCCCCCCCTCTCTTTTATCCCTCTCTCCTCCGTTTCTTTC
TACTCCCTATACTTCTCCCCTGCCTCCATTCTACCCTTCCCTCCTCCTCC
CTCTCCTTTTTTTCCATCTCTCCCCCCCCCTCTTTATCTTACCCCTCTCT
GTCCCCCTCCCCTTTTTCTCCCCTTTCCCCCTCCTCTCTTCTTTTTTCTC
TTCCTTTCCCTCTCCTTTTCTCTCCCTTCTTCCCCTCCTTTTTCCCCCCT
TTTTTTCCTCCCCCCATCCTCTTATCCTCTCTTCCTTTTTCTTCCCCCCC
CTCTTTTTTCCCCCTCTTCCTTTCTCTCCCTCCCTTATTCTCCCACTCCT
ATCTCATCCTTCTACTTTTCCCCTCTTTACCTCCCGCCTTTTCTCACCCC
CTCCCTCCCCCTN
CTCCCTCGATGCTCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAACCAGAGCCTAGGTGTCA
TTGTCACTGCTGGTGACCCTCTTAGGGAACTGTGGGAGTGTTAAGAGTTC
TAGCTCCTAAAGACATAATATGTGCCTTGAGTCAAGGACTCTAGATGATG
CTGTCACATCTTACATGGGATCACTGAGGCTGAGCAGCAACTGGAGATCA
GTCACATGATGGAGATGGGGAGAAATGGGTCTCTAAGAGTCATCAGGCTG
GGTAATTCTTTGCATTCCTGTTTTTGAAGTCCAGAAAATACAGTGAAGTC
TGCAGCTACCGCTTGAGCAAACCACTCCACGGGGTTCAGATTTCTCATAA
ATGATGCCTACGTCCGGCATCCTTTTGCCACCAATTTCTGATTCTTTGAC
TCCTGAGGAGATAACCTGAGACCCTCTTTCTGTCCCATTCTTCCTTCAGC
CTCCTTTTTTTTTTCTTTTTCCCCCCCCCTTTTTTTCCCCTCTTTCCTTT
CCCACCCTTTTCATCCCTTTCTTCTCTCTTCCTTTTCCCCTTTTTCCCCC
CTTTCCTCTCTCCCCTCCTTCTCTTTCCTTTTCCCTTTCTTTTTCCCCCC
CCCCTTTTCCTTCTTCTTCTTCTCTTTCTTTTTTCCCCCTATTTCTTCCT
CTTTCTCCCCATTCCTTTCTCCTTTCTTTTTCCCCCTCTTTTCCTCCTCC
CCCATTTCCTCTTTTTCGCCCCTCTCCCATTTATTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j09.g1 MSMg01no475_j09.g1 CHROMAT_FILE:
MSMg01no475_j09.g1 PHD_FILE: MSMg01no475_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:25 2005
         (234 letters)



>mm_chr3_38483422_38484055
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaccagagcctaggtgtcattgtcactgctggtgaccctcttagggaactgtgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtaaccagagcctaggtgtcattgtcactgctggtgaccctcttagggaactgtgggag 375

                                                                       
Query: 61  tgttaagagttctagctcctaaagacataatatgtgccttgagtcaaggactctagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgttaagagttctagctcctaaagacataatatgtgccttgagtcaaggactctagatga 315

                                                                       
Query: 121 tgctgtcacatcttacatgggatcactgaggctgagcagcaactggagatcagtcacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgctgtcacatcttacatgggatcactgaggctgagcagcaactggagatcagtcacatg 255

                                                                 
Query: 181 atggagatggggagaaatgggtctctaagagtcatcaggctgggtaattctttg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atggagatggggagaaatgggtctctaagagtcatcaggctgggtaattctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)