BAC Information

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BAC

Clone NameMSMg01-475K03
Chromosome3 (Build37)
Map Location 133,663,078 - 133,663,560
singlet/doubletsinglet
Overlap geneLOC100039168
Upstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K03.T7 (MSMg01no475_k03.b1)MSMg01-475K03.TJ (MSMg01no475_k03.g1)
ACCAG557414AG557415
length759738
length of high quality
(start - end)
480 (48 - 527)483 (77 - 559)
definitionCHROMAT_FILE: MSMg01no475_k03.b1 PHD_FILE: MSMg01no475_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:29 2005CHROMAT_FILE: MSMg01no475_k03.g1 PHD_FILE: MSMg01no475_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGC
GGAATTCACATTCTTTTACCGATAACCCCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTCCACCGGATGGTTTTAGCTCCCTTGTGAAAGA
CCAAGTGACCATAGGTGTGTGGACTAATTTCTGGGTCTTCAATTATATTC
CGTTGGTCTAACTGTCTGTTGCTGAACCAGTACCATGCAGTTTTTATCAC
AATGGTTCTGTAGTATAGCTTTAGATCAGGCATGGTGATTCCACCAGAGG
TTCTTTTATCATTGAGAATAGTTTTTGTTGTACTAGTTTTTTTGTTATTC
CAGAGGAATTTGCAAATTGTCTTTCTAACTCTGTCAAGAATTGAGTTGGA
ATTTTGATGGGATTGCATTAAATCTGTAGATTGCTTTTGGCAGGATAGGC
ATTTTTACTATATTAATCCTGCCAATCCATGAGCATGGGAAATCTTTCCA
TCTTCTGAGATCTTTTTTGGTTTCTTTCTTCAGAGTCTTGAAGTTCTTAT
CATACAGATCTTTCACTTCCTTAGTTACAGCCATGCCCACGTATTTTGTA
TTACTTGCGACTATCGAAAAAGCCGCCCCCTCCCTTATTTTTTTCTCGAC
CCGTTTTCCTTTTTTCTCAGAATGGTTTCCGATTCTTTTTCTCTATTTTT
TTTCCCTTTTCTCCCCCCCCATATCCTCCCCCTTCTTTTACTATATTTTC
TCTTTCCAA
NNNTTCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTCTGGAACTCTAATGAAAGG
TCCATATGCTACACAGTATTATCAGATGTTAAAGAGGGCTCCTTCATATA
CCTTCGAAAGCATTTAAGGTCGAGTGGACGGTGCAGGTTCTTACAGCATC
TATCCCTTAAATTTGGAAAGAAAAGGAGTGCTCAAATCTTAGCTTGTAGG
AGGAGATAGAAGATAAAATGCAAGAAAACCTTTGCTGTAAAGAGAAGCAC
AAACCACGATTCGCCCCTAGGGAACATCAGTTCCCCTCTCTCTGACTCTT
TTTTCGCTCACTCTCTCGCGTACACACAAAAAATATACTGAGGAATTTCA
AAGTCACTGGGTTAAAAGCAAACTTTAAAACAGCCAGGGAGCCTACAAAG
CAATCCCCATTCTGCCCTGAGTTATGTAGAGAGCAGCTTGGATCTTCACA
TATCTAATACAGTGTCAGAGCTAAGCCAGGCCCAGGATTGCCATGAATCT
TATATGAAGGCTAAGTGTCGCTTCTGCCGGGCACTATTTAAGGGGTAGGG
ATTTGGACCCCGGATTTATTCCTTTGCCCCCCTCCTGGGGCCCGGGGCGC
AGGATACCCCTTATGGTGCCACCTTTTAATGCCCGCTTCTGGAATTCCCC
CCCATCCCCATCGGATGCTTTCTTTCTCTTACCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k03.g1 MSMg01no475_k03.g1 CHROMAT_FILE:
MSMg01no475_k03.g1 PHD_FILE: MSMg01no475_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:29 2005
         (483 letters)



>mm_chr3_133662878_133663760
          Length = 883

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtctggaactctaatgaaaggtccatatgctacacagtattatcagatgttaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtgtctggaactctaatgaaaggtccatatgctacacagtattatcagatgttaaagag 624

                                                                       
Query: 61  ggctccttcatataccttcgaaagcatttaaggtcgagtggacggtgcaggttcttacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggctccttcatataccttcgaaagcatttaaggtcgagtggacggtgcaggttcttacag 564

                                                                       
Query: 121 catctatcccttaaatttggaaagaaaaggagtgctcaaatcttagcttgtaggaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catctatcccttaaatttggaaagaaaaggagtgctcaaatcttagcttgtaggaggaga 504

                                                                       
Query: 181 tagaagataaaatgcaagaaaacctttgctgtaaagagaagcacaaaccacgattcgccc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagaagataaaatacaagaaaacctttgctgtaaagagaagcacaaaccacgattcgccc 444

                                                                       
Query: 241 ctagggaacatcagttcccctctctctgactcttttttcgctcactctctcgcgtacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctagggaacatcagttcccctctctctgactcttttttcgctcactctctcgcgtacaca 384

                                                                       
Query: 301 caaaaaatatactgaggaatttcaaagtcactgggttaaaagcaaactttaaaacagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaaaaatatactgaggaatttcaaagtcactgggttaaaagcaaactttaaaacagcca 324

                                                                       
Query: 361 gggagcctacaaagcaatccccattctgccctgagttatgtagagagcagcttggatctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggagcctacaaagcaatccccattctgccctgagttatgtagagagcagcttggatctt 264

                                                                       
Query: 421 cacatatctaatacagtgtcagagctaagccaggcccaggattgccatgaatcttatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacatatctaatacagtgtcagagctaagccaggcccaggattgccatgaatcttatatg 204

              
Query: 481 aag 483
           |||
Sbjct: 203 aag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)