MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-475O16
Chromosome	3 (Build37)
Map Location	37,332,083 - 37,332,521
singlet/doublet	singlet
Overlap gene	Spata5
Upstream gene	Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream gene	LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Link	Open Mouse BAC browser

Click to get alignment info.

name	Anxa5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11747 MGI:106008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810062G17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72282 MGI:1919532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	LOC665709 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Exosc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50911 MGI:1355319
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccna2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12428 MGI:108069
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bbs7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71492 MGI:1918742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trpc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22065 MGI:109526
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932438A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229227 MGI:2444631
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 117 ESTs, 4 Proteins

name	Tenr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21744 MGI:103258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC652987 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:652987
definition	note : zinc finger, CCHC domain containing 17 pseudogene pseudo : _no_value

name	Il2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16183 MGI:96548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60505 MGI:1890474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cetn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207175 MGI:2677454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bbs12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241950 MGI:2686651
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041328 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041328
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins pseudo : _no_value

name	Fgf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14173 MGI:95516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040649 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040649
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Nudt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229228 MGI:2387618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spata5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57815 MGI:1927170
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665778 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665778
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins pseudo : _no_value

name	Spry1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24063 MGI:1345139
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG381438 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381438 MGI:3646006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038875 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041338 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG626367 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626367 MGI:3643738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 7 Proteins pseudo : _no_value

name	4930556A17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78044 MGI:1925294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC665811 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665811
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 11 Proteins pseudo : _no_value

name	EG665821 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665821 MGI:3643358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1107 ESTs, 11 Proteins

name	LOC100041366 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041366
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	LOC100040785 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Anxa5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753059 GeneID:11747 MGI:106008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : annexin A5 transcript_id : NM_009673.1

name	1810062G17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250850 GeneID:72282 MGI:1919532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 1810062G17 gene transcript_id : XM_001475130.1

name	Exosc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053920 GeneID:50911 MGI:1355319
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exosome component 9 transcript_id : NM_019393.2

name	Ccna2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753307 GeneID:12428 MGI:108069
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin A2 transcript_id : NM_009828.1

name	Bbs7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352247 GeneID:71492 MGI:1918742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bardet-Biedl syndrome 7 transcript_id : NM_027810.2

name	Trpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9507206 GeneID:22065 MGI:109526
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 3 transcript_id : NM_019510.1

name	4932438A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250852 GeneID:229227 MGI:2444631
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 117 ESTs, 4 Proteins product : RIKEN cDNA 4932438A13 gene transcript_id : XM_001475233.1

name	Tenr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361280 GeneID:21744 MGI:103258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis nuclear RNA binding protein transcript_id : NM_009350.2

name	Il2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982837 GeneID:16183 MGI:96548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 2 transcript_id : NM_008366.2

name	Il21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130431 GeneID:60505 MGI:1890474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 21 transcript_id : NM_021782.2

name	Cetn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891791 GeneID:207175 MGI:2677454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrin 4 transcript_id : NM_145825.2

name	Bbs12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922639 GeneID:241950 MGI:2686651
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bardet-Biedl syndrome 12 (human) transcript_id : NM_001008502.2

name	Fgf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106314 GeneID:14173 MGI:95516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 2 transcript_id : NM_008006.1

name	LOC100040649 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250856 GeneID:100040649
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100040649 transcript_id : XM_001475285.1

name	Nudt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130109 GeneID:229228 MGI:2387618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nudix (nucleoside diphosphate linked moiety X)-type motif 6 transcript_id : NM_153561.2

name	Spata5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946659 GeneID:57815 MGI:1927170
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated 5 transcript_id : NM_021343.1

name	Spry1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755649 GeneID:24063 MGI:1345139
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sprouty homolog 1 (Drosophila) transcript_id : NM_011896.1

name	EG381438 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348074 GeneID:381438 MGI:3646006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG381438 transcript_id : NM_198657.2

name	LOC100038875 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250807 GeneID:100038875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038875 transcript_id : XM_001471708.1

name	LOC100041338 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250890 GeneID:100041338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041338 transcript_id : XM_001476193.1

name	4930556A17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369508 GeneID:78044 MGI:1925294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 4930556A17 gene transcript_id : XM_979591.1

name	EG665821 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250864 GeneID:665821 MGI:3643358
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1107 ESTs, 11 Proteins product : predicted gene, EG665821 transcript_id : XM_979698.2

name	LOC100041366 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250893 GeneID:100041366
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : similar to Ubtf protein transcript_id : XM_001476247.1

name	Anxa5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753060 GeneID:11747 MGI:106008
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA]; GO:0050819 - negative regulation of coagulation [Evidence IEA] codon_start : 1 note : annexin V product : annexin A5 protein_id : NP_033803.1

name	1810062G17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250851 GeneID:72282 MGI:1919532
definition	codon_start : 1 product : hypothetical protein LOC72282 protein_id : XP_001475180.1

name	Exosc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506981 CCDS:CCDS17312.1 GeneID:50911 MGI:1355319
definition	GO_component : GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO:0005730 - nucleolus [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006396 - RNA processing [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 note : polymyositis/scleroderma autoantigen 1 product : exosome component 9 protein_id : NP_062266.1

name	Ccna2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753308 CCDS:CCDS17313.1 GeneID:12428 MGI:108069
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0001939 - female pronucleus [Evidence IDA]; GO:0001940 - male pronucleus [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence IMP] [Evidence IGI]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cyclin A2 protein_id : NP_033958.1

name	Bbs7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27597063 CCDS:CCDS17314.1 GeneID:71492 MGI:1918742
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : Bardet-Biedl syndrome 7 protein_id : NP_082086.1

name	Trpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507207 GeneID:22065 MGI:109526
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : receptor-activated cation channel TRP3; transient receptor protein 3 product : transient receptor potential cation channel, subfamily C, member 3 protein_id : NP_062383.1

name	4932438A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250853 GeneID:229227 MGI:2444631
definition	codon_start : 1 product : hypothetical protein LOC229227 protein_id : XP_001475283.1

name	Tenr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678283 CCDS:CCDS17315.1 GeneID:21744 MGI:103258
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003725 - double-stranded RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : testis nuclear RNA binding protein protein_id : NP_033376.1

name	Il2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110653 CCDS:CCDS17316.1 GeneID:16183 MGI:96548
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005125 - cytokine activity [Evidence ISS] [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005134 - interleukin-2 receptor binding [Evidence ISS] [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0050728 - negative regulation of inflammatory response [Evidence IMP]; GO:0042104 - positive regulation of activated T cell proliferation [Evidence IMP] [Evidence IDA] [Evidence ISS]; GO:0051024 - positive regulation of immunoglobulin secretion [Evidence IMP]; GO:0048304 - positive regulation of isotype switching to IgG isotypes [Evidence IMP]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0042523 - positive regulation of tyrosine phosphorylation of Stat5 protein [Evidence IDA] codon_start : 1 note : interleukin-2 product : interleukin 2 protein_id : NP_032392.1

name	Il21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11140821 CCDS:CCDS17317.1 GeneID:60505 MGI:1890474
definition	GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IDA] GO_process : GO:0001783 - B cell apoptosis [Evidence NAS]; GO:0045579 - positive regulation of B cell differentiation [Evidence NAS] codon_start : 1 product : interleukin 21 protein_id : NP_068554.1

name	Cetn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003866 CCDS:CCDS17318.1 GeneID:207175 MGI:2677454
definition	GO_component : GO:0005932 - basal body [Evidence IDA]; GO:0005814 - centriole [Evidence IDA]; GO:0009288 - flagellum (sensu Bacteria) [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA] [Evidence IDA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0001539 - ciliary or flagellar motility [Evidence IEA] codon_start : 1 product : centrin 4 protein_id : NP_665824.1

name	Bbs12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922640 GeneID:241950 MGI:2686651
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : Bardet-Biedl syndrome 12 protein_id : NP_001008502.2

name	Fgf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106315 CCDS:CCDS17320.1 GeneID:14173 MGI:95516
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005104 - fibroblast growth factor receptor binding [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IDA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0000186 - activation of MAPKK activity [Evidence IDA]; GO:0001525 - angiogenesis [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0008283 - cell proliferation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0010001 - glial cell differentiation [Evidence IMP]; GO:0001759 - induction of an organ [Evidence IDA]; GO:0030324 - lung development [Evidence IDA]; GO:0045597 - positive regulation of cell differentiation [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI] [Evidence IDA]; GO:0001934 - positive regulation of protein amino acid phosphorylation [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0046668 - regulation of retinal programmed cell death [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : fibroblast growth factor 2 protein_id : NP_032032.1

name	LOC100040649 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250857 GeneID:100040649
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475335.1

name	Nudt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956340 GeneID:229228 MGI:2387618
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : anti-sense basic fibroblast growth factor B product : nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein_id : NP_705789.1

name	Spata5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946660 CCDS:CCDS17321.1 GeneID:57815 MGI:1927170
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : spermatogenesis associated factor; permatogenesis associated 5 product : spermatogenesis associated 5 protein_id : NP_067318.1

name	Spry1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755650 CCDS:CCDS17322.1 GeneID:24063 MGI:1345139
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001759 - induction of an organ [Evidence IMP]; GO:0043407 - negative regulation of MAPK activity [Evidence IDA]; GO:0009966 - regulation of signal transduction [Evidence IEA]; GO:0001657 - ureteric bud development [Evidence IGI] [Evidence IMP] codon_start : 1 note : inhibitor of receptor tyrosine kinases product : sprouty homolog 1 protein_id : NP_036026.1

name	EG381438 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348548 GeneID:381438 MGI:3646006
definition	codon_start : 1 product : hypothetical protein LOC381438 protein_id : NP_941059.1

name	LOC100038875 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250808 GeneID:100038875
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471758.1

name	LOC100041338 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250891 GeneID:100041338
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476243.1

name	4930556A17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369509 GeneID:78044 MGI:1925294
definition	codon_start : 1 product : hypothetical protein LOC78044 protein_id : XP_984685.1

name	EG665821 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369511 GeneID:665821 MGI:3643358
definition	codon_start : 1 product : hypothetical protein protein_id : XP_984792.1

name	LOC100041366 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250894 GeneID:100041366
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476297.1

name	LOC665709 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665709
definition	number : 1 pseudo : _no_value

name	LOC100040785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040785
definition	number : 1 pseudo : _no_value

name	LOC100041328 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250889 GeneID:100041328
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins product : similar to ganglioside-induced differentiation associated protein 3 pseudo : _no_value transcript_id : XR_032593.1

name	LOC665778 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250860 GeneID:665778
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins product : similar to px19-like protein pseudo : _no_value transcript_id : XR_032230.1

name	EG626367 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149250861 GeneID:626367 MGI:3643738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 7 Proteins product : predicted gene, EG626367 pseudo : _no_value transcript_id : XR_032288.1

name	LOC665811 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250892 GeneID:665811
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 11 Proteins product : similar to hCG2016451 pseudo : _no_value transcript_id : XR_032622.1

clone name	MSMg01-306O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536E12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-173L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328I08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-475O16.T7 (MSMg01no475_o16.b1)	MSMg01-475O16.TJ (MSMg01no475_o16.g1)
ACC	AG557631	AG557632
length	771	773
length of high quality (start - end)	439 (72 - 510)	454 (79 - 532)
definition	CHROMAT_FILE: MSMg01no475_o16.b1 PHD_FILE: MSMg01no475_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:51 2005	CHROMAT_FILE: MSMg01no475_o16.g1 PHD_FILE: MSMg01no475_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:51 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCCAGCGCCTTGCCGAAATTACTCTATGGTCCTCCAGGTACCGGAAA GACAATGATTGCTAGGGCTGTTGCTAATGAAGTTGGAGCTTATGTTTCTG TAATTAATGGTCCTGAAATTATAAGCAAGTAGGTATATGACTCAGTAAGT AAAGTTAACATTACTAAGTTTATATAGTTCAGATGTGGCTCCTTAAAACA GTTGTGTTGTATTCCAACAAGATATTTCATGCATTAAACTATTTTGGAGT ATTTTAAATTTGCCCTTTTTTCCTTAGTGTGATTTTACCCACGTGCTTAG CCAGACCTCATATTTTAAATGTTTTTGTGATTATACATGTTCTTCTAAAT TTACTTTATAAATTCTATACACACAGAATTTGAAACTAATTTTGAAAGTA ATTTTAAGTATTTTAGAAATGCTTGAAAATTCAGACTCTCTTTTATAGAA AAAATCTATAAACAATAAGAGTACATTTTTTTTTCCTTCCTCATTATAGA TTCTACGGTGAGACTGAAGCCCGGTTACTCCAGATATTTGCTGAAACTAC TCCTACGGATTGTTAAAATTTGATGCCTTTGGAACCTCCGAAACCCCATT CACACATTTTTTTTTTTTTTTTTCCCAGATAATCACCCACCATACTAACT GTATGGCCTTTCTAACGCAGGACGTTTTATTCTAAATGTATTCCACCCAT TCTTGCCCTTCCTTTTTTTTN	NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGACACACCCATTAAAGT CTCACAAACAAACACTATTGCTTAAACAGGAGCTGAGCAAGGACAACAGA TATATTAACGTGAACAGGGAAATCCCAGGGGGCCTTGCCCTTGTACATGG AATTAAAGAATGCTGAGGGGCTGGAGAAATGGCTCAGAAGTTAAGAGCAG TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCTAGCAATCACGTGGTG GCTCACAACTATCTGTAATAGGGTCTGATGCCCTTTCTGGCATGCAGGTA TGCATGCAGATAGACTACTGCTATACATAAAATAAATAAATCTTTTAAAA AAATGATGAGAAGGGAGAAAGGATCTTCTCCAGGGAAGAGCACTCCAACT GGGTATCCAACTGCCCTGAAAACATACATACAAGTGACAGACTGGGCAGG TTGAATTTATGTATTTAGAAGTGTGTGTGTGTGTGCGTCCCTTTCTCCCT CCCCCCCTCTCTTTCTTTCTCTCTCCCCCCCTCTCTTTTTTCCCCCCCCC TTTCTTTCTCTCCTCCCCCCCCTCTCCTCTTTTTTCTTCCTTCCCCCCCT CCTCTTTTCCCCCCCCCCTTCCCTTTTTCCCCCTCCCTCTCCCTTTTTCC CCCTCTCCTTTTTTTTTTCCTTCCCCCCTTTCCCTTTTTTTTCCCCCTCC CTTTCTTTCTCCCCCTTCCCTCT
quality values	Open. Hide. 0 3 8 8 8 10 13 10 11 28 37 30 30 27 22 25 32 19 20 22 24 19 23 30 33 28 22 29 29 29 21 19 7 7 7 8 7 9 9 9 8 8 8 8 11 13 12 22 23 28 30 28 28 31 28 31 31 30 21 25 9 7 8 7 7 7 7 7 7 7 10 14 14 24 34 39 41 42 48 48 53 53 57 57 59 53 53 53 53 53 53 43 43 32 32 30 42 42 57 57 53 50 48 42 42 51 53 68 68 68 68 68 68 44 44 28 23 23 25 36 36 43 43 43 43 43 57 44 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 57 57 57 57 57 50 50 50 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 51 50 50 68 57 57 57 57 52 57 59 59 59 59 59 52 52 52 57 57 68 68 68 68 68 68 68 68 59 44 43 33 33 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 59 59 59 59 68 68 68 57 57 57 32 32 12 19 15 20 15 34 27 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 46 46 43 37 37 59 59 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 57 53 53 50 50 50 50 59 59 59 27 27 9 6 6 6 6 6 6 6 9 9 21 27 44 37 37 37 35 32 41 41 59 48 48 48 59 59 59 59 59 59 59 43 43 48 48 41 41 39 28 24 11 11 11 13 21 23 30 28 23 28 23 28 28 37 34 34 28 37 37 47 47 50 50 59 59 57 57 57 48 48 48 48 34 24 13 12 10 19 26 57 57 48 48 48 48 48 57 57 48 48 48 48 59 59 47 47 47 30 30 17 17 17 26 19 23 23 28 32 37 47 48 48 48 48 47 46 43 46 46 48 48 57 57 57 57 57 57 48 43 43 43 43 43 59 47 47 39 35 35 35 44 43 43 43 35 35 32 42 28 42 35 25 25 24 21 15 26 23 34 36 30 19 15 13 13 21 20 31 23 28 28 37 37 37 37 37 36 36 35 32 31 41 41 25 28 13 18 18 18 18 11 20 9 9 10 13 12 8 13 15 12 12 13 16 11 14 23 30 43 48 48 26 26 28 24 20 28 19 25 12 12 12 12 12 14 17 22 11 10 8 15 15 19 16 15 16 15 10 10 10 16 19 31 34 32 23 17 11 12 10 11 11 13 18 17 20 19 14 10 11 8 8 10 8 13 10 11 12 15 24 24 10 12 9 9 9 10 10 8 10 8 8 8 8 8 11 10 11 11 15 17 16 19 13 10 10 10 13 9 16 12 12 10 15 10 8 11 8 8 6 6 10 7 9 8 8 8 9 9 9 11 11 12 16 23 12 12 11 13 6 6 6 6 6 8 6 6 8 12 14 16 23 22 24 20 19 25 22 22 17 17 14 10 8 8 10 8 8 8 10 10 10 8 8 8 8 10 6 6 6 8 8 9 11 12 11 9 9 8 8 6 7 8 8 8 8 12 9 8 8 8 8 8 6 9 8 8 8 8 8 6 6 6 6 6 8 8 8 6 6 8 8 11 8 8 6 6 10 8 10 10 14 16 9 9 9 10 10 9 9 9 10 10 8 8 8 10 15 10 10 9 10 13 16 20 17 16 10 10 3 0	Open. Hide. 0 3 6 6 8 8 8 8 8 8 8 8 9 9 6 10 12 30 34 39 32 37 39 39 39 39 39 37 37 44 21 18 18 9 9 9 10 9 9 10 12 10 10 10 24 23 32 32 31 39 35 37 37 37 37 37 41 59 37 29 20 9 11 9 9 9 10 10 19 23 39 39 28 28 28 28 32 35 32 36 36 36 47 53 50 50 57 53 57 57 57 57 57 57 57 59 54 54 54 54 50 50 50 50 50 54 50 51 50 50 50 51 54 68 68 68 57 57 57 54 54 59 59 68 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 50 50 50 50 50 50 50 51 68 68 68 68 68 68 57 57 68 59 57 57 57 48 48 48 51 51 51 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 43 39 43 39 31 27 35 38 44 59 68 68 68 68 68 68 57 57 59 59 59 59 57 57 68 68 68 57 59 68 59 59 57 57 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 59 59 68 59 59 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 57 57 59 59 59 59 59 59 68 68 59 59 57 57 57 57 57 57 57 57 57 57 59 59 59 68 68 68 68 59 59 59 57 57 57 57 48 48 48 59 59 59 57 57 54 57 57 57 57 57 47 47 47 57 57 48 48 43 43 47 47 47 48 48 48 54 54 32 32 20 20 20 32 41 43 41 41 37 33 33 37 40 43 43 39 39 39 43 39 40 32 34 23 23 23 28 28 37 37 30 30 30 37 37 34 25 18 18 20 23 17 22 22 18 25 29 37 37 37 37 40 37 39 35 35 30 30 30 36 28 26 19 13 13 13 21 23 28 34 24 16 16 11 11 8 10 9 8 8 8 8 10 9 12 11 19 21 9 9 12 9 10 13 23 21 19 19 21 10 8 9 10 15 17 10 19 15 10 10 11 11 9 8 10 8 8 8 13 12 10 11 13 10 8 10 9 8 8 8 12 10 10 8 8 8 8 8 8 11 12 15 16 15 15 15 19 10 12 10 8 8 8 8 8 8 13 10 10 16 10 13 12 16 9 8 8 10 8 8 8 8 10 12 12 12 14 14 19 13 16 16 21 16 11 11 11 12 13 14 21 14 10 8 15 10 10 10 19 19 22 17 11 10 10 10 10 10 13 13 9 9 9 12 13 27 28 33 28 27 14 14 14 20 9 9 8 8 8 8 10 10 11 12 18 15 15 19 19 21 10 10 10 15 8 6 6 6 6 10 11 22 22 30 30 30 33 23 21 15 15 11 17 17 14 16 18 22 18 18 16 11 10 12 10 12 6 6 8 10 10 16 16 29 25 17 14 11 9 9 20 10 10 12 10 13 10 14 9 14 10 12 10 15 17 16 11 9 9 9 11 10 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no475_o16.b1 MSMg01no475_o16.b1 CHROMAT_FILE:
MSMg01no475_o16.b1 PHD_FILE: MSMg01no475_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:51 2005
         (439 letters)



>mm_chr3_37331883_37332721
          Length = 839

 Score =  826 bits (427), Expect = 0.0
 Identities = 436/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttactctatggtcctccaggtaccggaaagacaatgattgctagggctgttgctaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactctatggtcctccaggtaccggaaagacaatgattgctagggctgttgctaatgaa 260

                                                                       
Query: 61  gttggagcttatgtttctgtaattaatggtcctgaaattataagcaagtaggtatatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggagcttatgtttctgtaattaatggtcctgaaattataagcaagtaggtatatgac 320

                                                                       
Query: 121 tcagtaagtaaagttaacattactaagtttatatagttcagatgtggctccttaaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtaagtaaagttaacattactaagtttatatagttcagatgtggctccttaaaacag 380

                                                                       
Query: 181 ttgtgttgtattccaacaagatatttcatgcattaaactattttggagtattttaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgttgtattccaacaagatatttcatgcattaaactattttggagtattttaaattt 440

                                                                       
Query: 241 gcccttttttccttagtgtgattttacccacgtgcttagccagacctcatattttaaatg 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gcccttttttcctgagggtgattttacccacgtgcttagccagacctcatactttaaatg 500

                                                                       
Query: 301 tttttgtgattatacatgttcttctaaatttactttataaattctatacacacagaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttgtgattatacatgttcttctaaatttactttataaattctatacacacagaattt 560

                                                                       
Query: 361 gaaactaattttgaaagtaattttaagtattttagaaatgcttgaaaattcagactctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaactaattttgaaagtaattttaagtattttagaaatgcttgaaaattcagactctct 620

                              
Query: 421 tttatagaaaaaatctata 439
           |||||||||||||||||||
Sbjct: 621 tttatagaaaaaatctata 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information