BAC Information

Click to search

BAC

Clone NameMSMg01-476I10
Chromosome3 (Build37)
Map Location 142,502,415 - 142,502,588
singlet/doubletsinglet
Overlap genePkn2
Upstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b
Downstream geneLOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476I10.T7 (MSMg01no476_i10.b1)MSMg01-476I10.TJ (MSMg01no476_i10.g1)
ACCAG558096AG558097
length760771
length of high quality
(start - end)
236 (79 - 314)174 (73 - 246)
definitionCHROMAT_FILE: MSMg01no476_i10.b1 PHD_FILE: MSMg01no476_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:39 2005CHROMAT_FILE: MSMg01no476_i10.g1 PHD_FILE: MSMg01no476_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGGATCCGCNG
GAATCTCAACTTCCTAAACTGAGTGGNTCAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATACAAATCAAAACAACCCCGAGATTC
CACATCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGCTAGAGCAG
ATGCTGGTGAGGATGTGGTGAAAGAGAAACACTCCTCCATTGCTGGTGTT
ATTGTAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGCAGTTCCTCAGA
AAATTGGACATATTTTCATTGTTTGATCCAGGAATACCTCTCCTGGGCAT
ATACCCTGATTATGTTCCAACTGGCAATAAGGACACATGTTCCACTATGT
TCCTAGCAGCCTTATTTATAATACCCAGAAGTTGCAAACAATCCTGATGT
CCCTCATCAGACGACCGCTATACTTAACATGTGCCACATTCACTCTATGT
ATTACTACTCTTTTATTACCAATCACCGATTTTTCCACACCCCCGGTTAT
ATGTATGTATCTGGACCATCATTTCCCTGACTGTGTTATCCTTCCCATAT
TTCATTTCATTTCGTATTCATTTTCTGTTCCCTGCCTAATCCCGTTATAT
TTTCTCTCTTCTCCCCCCCTTTTTTTTTTCCCCTTTTTTTCTTCTTCCCC
CACCTTTTCACCCTTCTCTTTCTCCCTTCCTTTCTCCCCTTTTCATTATT
CCCTCTTTAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATATCAGCACAATTCTTTATTATCTGTAAGCACAAGGAGA
TTCCATTTAAGTGACTTGAAACTTATTTCAAACTCTTGTTTTTTGAATAC
ATTAACTTACACATTATGTTTTCAATGATAATTTTTATTAATATATATCA
ATTGTATGATATAATGGGTTTTATTGTGCCATTTTCACACATTCAGATAA
TTTATTTTGTTCAGATTCACCCTGACATCTCAGTTTTAATCAACAGTTGA
TTCTAGCACCAATCATTTGATACTTTGTACACAGATTGCCCTAGTACTCC
AGATACTTTTTTTACTGACCCCCGTACTTCTACTACTTACTTTAGACTGA
TGCCCTTACTCAATCTACTGTATATATATCTTATCCTATATCCTGCCGTT
CATAATATGATACTTATGTCCTCTAACGCCTCTTCTTCCCCACTTAAATT
CCTATTATTACACGTTTTGTTCACCTTACCCTGTCTCACTTTTTTCTTTT
CACCTCCCTTTCCCCTTTTTTTCCCTTTTTTTTCTTCCCCCTTTTTTCCT
TTTCCTTCTCCCTACCCTCCTTACCCTTTTTCCCCCTCCCCCCCTCACCT
TTTCTCCTTTTTTTTCCTTCTTTTCCCTTTCCCTCTCCTTCATATCCTCC
TCCTTTATTTTTCCCCCCTCCCTTTTTTTTTTTTTTCCTCTCTGCCATCT
TTTTTTCCCTTTCTTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_i10.g1 MSMg01no476_i10.g1 CHROMAT_FILE:
MSMg01no476_i10.g1 PHD_FILE: MSMg01no476_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:40 2005
         (174 letters)



>mm_chr3_142502284_142502857
          Length = 574

 Score =  313 bits (162), Expect = 3e-90
 Identities = 171/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttattatctgtaagcacaaggagattccatttaagtgacttgaaacttatttcaaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 305 ttctttattatctgtaagcacaaggagatttcatttaagtgacttgaaacttatttcaaa 246

                                                                       
Query: 61  ctcttgttttttgaatacattaacttacacattatgttttcaatgataatttttattaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 ctcttgttttttgaatacattaacttacacattatgttttcaatgataatttttattact 186

                                                                 
Query: 121 atatatcaattgtatgatataatgggttttattgtgccattttcacacattcag 174
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 185 atatatcaattgtatgatatcatgggttttattgtgccattttcacacattcag 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)