BAC Information

Click to search

BAC

Clone NameMSMg01-476J22
Chromosome3 (Build37)
Map Location 38,714,146 - 38,714,567
singlet/doubletsinglet
Overlap genenone
Upstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneFat4, LOC100041432, LOC100040853, LOC100041443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J22.T7 (MSMg01no476_j22.b1)MSMg01-476J22.TJ (MSMg01no476_j22.g1)
ACCAG558167AG558168
length793788
length of high quality
(start - end)
414 (45 - 458)422 (74 - 495)
definitionCHROMAT_FILE: MSMg01no476_j22.b1 PHD_FILE: MSMg01no476_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:47 2005CHROMAT_FILE: MSMg01no476_j22.g1 PHD_FILE: MSMg01no476_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTTGTTTCCCTTTACCTTTGATGAGTATGAAGTGCCCCTCTTTG
TCTTTTTTGATGACTTTGGGTTGGAAGTCGATTTTATTAGATATTAGAAT
GGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGAAAATTGTTTTCC
AGCCTTTCATTCTGTGGTAGTGTCTATCTTTTTCCCTGAGATGGGTTTCC
TGTAAGCAGCAAAAGGTTGGGTCCTGTTTGTGTAGCCAGTCTGTTAGTTT
ATGTCTTTTTATTGGGGAGTTTTGTTTATTGATATAAGGAGATATTAAGG
AAAAAGTAATTGTTGCTTCCCATTATTTTTGTTCTTAACGCTGGCATTCT
GTTCTTGTGGCTGTCTTCTTTTAAGTTAGTTGAAGGATTACTTTCTTTTT
TTTTTTCTACGATGCGTTTTCCGCCCTTGTATTGCTTTTTTTTGCCCGCC
TCCTCTTCCTTTTTTTTTCCTTGAATATTTGCCTCCCTTTATCTATTTTC
GCCTTTTTTTTTTTTCCCCCCCCCCCCTTTTTCCCTTTTTAACCCCCCCC
CGTCTTTTCTTTCCCCCGCCTCTTCACACACTACTTCTCCTTTTCACCCA
TATCTACCCCACTTCTCCCTCCTCTTTCCTTTTCCTCTCCCCTTCCTTCT
TCCTCTTTCTTCTTCCTCCTTTTTTCTTTTTTCCCCCCTCTTCTCTTTTT
ATCCCCTCCCTTCTGTTCTACCCCTCTCTCTACTCTAACATTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTAGCCCAACATAAATATGCACAGTA
CACACACTAAGGCTGACACTTCTCAAAGCTCAAGCATAAAATAAGACTTT
TAAAATACTTGCCAAAGAGAAATAGAATCACCAGGACAAACTTTATTTAA
GAGCTTTCTTCTGATTTCAGTTACATTAAATTTGAAAGATAATTTTTAAA
AAATATACTGCCTCGCTGCGGTTGAGAAAAAGCCTAGCTGGGCTTAATAC
TACATTGAATGGTGGAGATTGTTTTTATAACCCAAGTAAAGCTGATTTTT
CAGTAGAGAATGTCTTCTTTTGGCACTGATTGGTTAAGGAGTATGGTGGA
CCTTTTAGATCGTGCAACGGCCTCCTAGGAATCCATACACTAAACCCTAG
ATTCTTTCTTATAGATGAAGAAACACAGGGCTGAGAAGTGGCTCAGGGGT
TAAGAATGCTTATTGTTCTTGCAGAGGACCTCAGTTCAGCTACCAGCACC
CTCCCATATTGAGTGACACATTGCCCCCCTGAAAGGCCAGCTGCATTTGA
CATGCCTCTCTTGGCTCTGGTTGGGTCTTTTGCACTATTCTTGCCCTGTT
TTTCGTGTACCCCCCTCTTTTTCTTTTTTTTTTTCTCCTATCCTTTTTCC
CCCCCCCTTTTCCCTTTTTCTATCCCCCCTCTTCTTCTCTTTTTCCCCTT
CTTATCCTCCCCCCCCTTTTTTTCTTCTCTCCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j22.g1 MSMg01no476_j22.g1 CHROMAT_FILE:
MSMg01no476_j22.g1 PHD_FILE: MSMg01no476_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:47 2005
         (422 letters)



>mm_chr3_38713946_38714767
          Length = 822

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/426 (98%), Gaps = 8/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagcccaacataaatatgcacagtacacacactaaggctgacacttctcaaagctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cctagcccaacataaatatgcacagtacacacactaaggctgacacttctcaaagctcaa 563

                                                                       
Query: 61  gcataaaataagacttttaaaatacttgccaaagagaaatagaatcaccaggacaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcataaaataagacttttaaaatacttgccaaagagaaatagaatcaccaggacaaactt 503

                                                                       
Query: 121 tatttaagagctttcttctgatttcagttacattaaatttgaaagataatttttaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tatttaagagctttcttctgatttcagttacattaaatttgaaagataatttttaaaaaa 443

                                                                       
Query: 181 tatactgcctcgctgcggttgagaaaaagcctagctgggcttaatactacattgaatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatactgcctcgctgcggttgagaaaaagcctagctgggcttaatactacattgaatggt 383

                                                                       
Query: 241 ggagatt----gtttttataacccaagtaaagctgatttttcagtagagaatgtcttctt 296
           |||||||    |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggagattgaggg----tataacccaagtaaagctgatttttcagtagagaatgtcttctt 327

                                                                       
Query: 297 ttggcactgattggttaaggagtatggtggaccttttagatcgtgcaacggcctcctagg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttggcactgattggttaaggagtatggtggaccttttagatcgtgcaacggcctcctagg 267

                                                                       
Query: 357 aatccatacactaaaccctagattctttcttatagatgaagaaacacagggctgagaagt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatccatacactaaaccctagattctttcttatagatgaagaaacacagggctgagaagt 207

                 
Query: 417 ggctca 422
           ||||||
Sbjct: 206 ggctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)