BAC Information

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BAC

Clone NameMSMg01-476K09
Chromosome3 (Build37)
Map Location 43,646,129 - 43,646,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788, LOC100039264
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K09.T7 (MSMg01no476_k09.b1)MSMg01-476K09.TJ (MSMg01no476_k09.g1)
ACCAG558189AG558190
length765745
length of high quality
(start - end)
244 (70 - 313)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no476_k09.b1 PHD_FILE: MSMg01no476_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:49 2005CHROMAT_FILE: MSMg01no476_k09.g1 PHD_FILE: MSMg01no476_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAA
TTCCTGTTACCTACACGATGGCACACTCAGTTTCTGTGAGTTAAGCTGCA
TATTCTTGTGGTTTTTACTCAGCCTTCTAGGGAATTTATATATCCTAACA
TTAAAATATGTAAAATAAAAAATAAAGCATATTTTACCAAACTTTCCAAA
GCACTTATTGTAAATTTATATCATCACAGTTTATTAAATATTTAGGAGAA
ATGGAAAAATTTAAAAGTAAATGTTGCATTGTCTATTGATGTTTATGGAT
TGAAGTTCTATTATGTGTTATAAAATATAACTAAAATACATTGATAAATA
TTAGTATTTATAGCTAACGTTCTAGGAAATATAAATTTTCTTGCTAATTC
ACATTGGATAACCTGGTCTTATTTTATAAACTGCGCTGATATGCGACGTC
CTTGAACTTGATCATAGCGAGCTTGTCTTTATTATTTCATCTTCTTTTCT
CCTCGTTAGTAATGATTACATCTATAGGTTTACGCCTTACCTAACCTATT
ACATAACTAACTCACTACACACGTTCCTTACATTCCCTTGTCACTCCCCT
ATCCGAACATATCTCTTTTGTATGTTGGTTACTTTATTTATCTTCGCCTA
ATTTCCCGCTCACTTTCCCTCTCCTTTTTTCGATTTCACAATTTCTTTAC
CTGGAATCGCCGCCTGTCCTGCATTATTGTTCTTCGCCCGTTACCTTTTC
CGATCCCCCCTTGCT
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCCGCGCAATTCCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGACATATATCCAGATGATGTTCCAACTGGTAAGAA
AGACACATGCTCCAATATATTCGTAGCAGCCTTATTTATAATAGCCAGAT
TCTGGGAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATG
TGGTACATTTACACTTTGTTTTTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGAGTGTCATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCAAATGATATGTTCTCACTGACAAG
TGGATATTAGCCCACAAACTTAGAATACCCAAAATATAAGATACAATTTG
CAAAACACATGAAACTCAAGAAGAACAAAAACCAGTGTGGATACTTTGCC
CCTTCTTAGAATTGGGAACAAAACACCCATGGAAGTAGTTACCGAGACAC
AGTTTGGAGCTCATACGATAGGATAGACCATCTAGGGACTGCCATATCTT
GTTTTCCTTCCCATAATCAGCCTCCCTATGCTGACCCCCCTGCTTACTTT
AATTATATCTTGCTGAATAGACCCCTATATAGCCGTTTCCTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k09.b1 MSMg01no476_k09.b1 CHROMAT_FILE:
MSMg01no476_k09.b1 PHD_FILE: MSMg01no476_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:49 2005
         (244 letters)



>mm_chr3_43645929_43646573
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcacactcagtttctgtgagttaagctgcatattcttgtggtttttactcagccttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcacactcagtttctgtgagttaagctgcatattcttgtggtttttactcagccttcta 386

                                                                       
Query: 61  gggaatttatatatcctaacattaaaatatgtaaaat-aaaaaataaagcatattttacc 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gggaatttatatatcctaacattaaaatatgtaaaataaaaaaataaagcatattttacc 326

                                                                       
Query: 120 aaactttccaaagcacttattgtaaatttatatcatcacagtttattaaatatttaggag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaactttccaaagcacttattgtaaatttatatcatcacagtttattaaatatttaggag 266

                                                                       
Query: 180 aaatggaaaaatttaaaagtaaatgttgcattgtctattgatgtttatggattgaagttc 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatggaaaaattttaaagtaaatgttgcattgtctattgatgtttatggattgaagttc 206

                
Query: 240 tatta 244
           |||||
Sbjct: 205 tatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)