CTACCAACATTTTAATAATACCTTTCTTATACTTCAATATCCTCATTTTT
TTACCATACACATACTTTTTAACTATTTAAAATTTACTCACAAAACATTT
TTTATTCCCTTTTTCTTTATTTATTTTAATACACAATATCTCACCCCCTT
TCTTCTTTTTTTATAAACACTTTCCCTCNCTTNNNAAANNTCTTAACGNA
CNNNACCTATAAATTAAAATCCCCCTTAATACCAAACTTCACTATTAAGG
TTTTTACCCAACCAACCGGGAAATTTCATTTTCTTTTTTTTATTTACCCT
TTGNAAGTTAACTTAACTTCCCCAATTTTTTTTGGTTAAAAATTTTTTAA
CCCCACCAATTTTTTTCCTGGNGTTAAATCCCCCAATTTTTTTTCCCCCT
TTTTTCCCCNNAAATTTTTTTGNGGGTATACNNAAAACCCCCACCCCTAC
TATATATATATTNTTTTTCCCACAAAACAAAAAAAAAAATAATTATCACN
TATATTCTACCTTTCACCAACCTACCCATAAACAAAAAAAA

AAAACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTGGCTTTAACGTTTGT
CTTGGGCAAAATAATTATCCTGTGTCTTAGCTAGACTCCTGAAGAAATGC
TGGAATATGCTCTCTATCAGCAGTACTGCAACAATTGGTCTTCAAGACTC
ATAAATTAATAAATTTTTGCAACAACTCAAAATATAGTTATGACAGATGT
CATTTCTTCTAAATGGAGCTTTAAATTTCCTGTCATTTTAAAATTTCCAT
TTTTAATATTTATTTGAGTTAAAAAACATTGAGATGGGTTCACATAGTTT
TCATAATTATGAATATATAAAATATGTATATACTTCAATCAAATAAATAA
ACTCCAATATCACAGGTTTGAGCTATTGTTTAATAAATCATTGATGATGC
ATGCGGGAAATAATCTATACTTTCATATATGAGTCACTTCTGGGTAATGT
TATAAAAACATCACAAGGCTGTGACTTCCCCACATTTTGTGGTAATCCTG
TGTTATTTTATTTTTCTCTAGTGTGTTCATTCTAAACAACGTCATTCATC
ACTTTGCACATCTACTAACAATACTGCCCTCTTGGTTTCCCAAAGATTGC
ATTGACTATTGTCCTACCACTCAGTAATTGCTTTGTATCACAATTTGAAC
ACTGAATTGGCTGCTAAATTTTTCCTTAACTGTTAN

Query= MSMg01no477_a02.g1 MSMg01no477_a02.g1 CHROMAT_FILE:
MSMg01no477_a02.g1 PHD_FILE: MSMg01no477_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:18 2005
         (644 letters)



>mm_chr3_123917555_123918600
          Length = 1046

 Score = 1176 bits (608), Expect = 0.0
 Identities = 636/646 (98%), Gaps = 2/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctggctttaacgtttgtcttgggcaaaataattatcctgtgtcttagctagactc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcctggctttaacgtttatcttgggcaaaataattatcctgtgtcttagctagactc 260

                                                                       
Query: 61  ctgaagaaatgctggaatatgctctctatcagc--agtactgcaacaattggtcttcaag 118
           |||||||||||||| ||||||||||||||||||   ||||||||||||||||||| ||||
Sbjct: 261 ctgaagaaatgctgaaatatgctctctatcagctgggtactgcaacaattggtctacaag 320

                                                                       
Query: 119 actcataaattaataaatttttgcaacaactcaaaatatagttatgacagatgtcatttc 178
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcataaattaataaattttcgcaacaactcaaaatatagttatgacagatgtcatttc 380

                                                                       
Query: 179 ttctaaatggagctttaaatttcctgtcattttaaaatttccatttttaatatttatttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaaatggagctttaaatttcctgtcattttaaaatttccatttttaatatttatttg 440

                                                                       
Query: 239 agttaaaaaacattgagatgggttcacatagttttcataattatgaatatataaaatatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaaaaaacattgagatgggttcacatagttttcataattatgaatatataaaatatg 500

                                                                       
Query: 299 tatatacttcaatcaaataaataaactccaatatcacaggtttgagctattgtttaataa 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 aatatacttcaatcaaataaataaactccaatatcacaggtttgagctattgtttaatag 560

                                                                       
Query: 359 atcattgatgatgcatgcgggaaataatctatactttcatatatgagtcacttctgggta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcattgatgatgcatgcgggaaataatctatactttcatatatgagtcacttctgggta 620

                                                                       
Query: 419 atgttataaaaacatcacaaggctgtgacttccccacattttgtggtaatcctgtgttat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttataaaaacatcacaaggctgtgacttccccacattttgtggtaatcctgtgttat 680

                                                                       
Query: 479 tttatttttctctagtgtgttcattctaaacaacgtcattcatcactttgcacatctact 538
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttatttttctctagtgtattcattctaaacaacgtcattcatcactttgcacatctact 740

                                                                       
Query: 539 aacaatactgccctcttggtttcccaaagattgcattgactattgtcctaccactcagta 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaatactgccctcttggtttcccaaagattgcattgactattgtcctaccactcagta 800

                                                         
Query: 599 attgctttgtatcacaatttgaacactgaattggctgctaaatttt 644
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgctttgtatcacaatttgaacactgaattggctgctaaatttt 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space:   656824
Effective search space used:   656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)