Query= MSMg01no477_a03.b1 MSMg01no477_a03.b1 CHROMAT_FILE:
MSMg01no477_a03.b1 PHD_FILE: MSMg01no477_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:18 2005
(682 letters)
>mm_chr3_80620076_80621156
Length = 1081
Score = 1164 bits (602), Expect = 0.0
Identities = 659/678 (97%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 5 gaattccacaaaagaaattttaacccactagcagtcctcctagcagtaacaacttctgtg 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattccacaaaagaaattttaacccactagcagtcctcctagcagtaacgacttctgtg 264
Query: 65 tgaaaatgtacataatggttgggcactgttttaaaagtaccccatgtttggcttactatt 124
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacaatgtacataatggtcaggcactgttttaaaagtaccccatgtttggcttactatt 324
Query: 125 taagatataaaccttttaccccaccataataaagacacagggtttgattttcactgacct 184
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagatataaaccctttcccccatcataataaagacacagggtttgattttcactgacct 384
Query: 185 attgttctttgtttgtctttgtgctctcagtgatgagataccaatacagtgactgctata 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgttctttgttcgtctttgtgctctcagtgatgagataccaatacagtgactgctata 444
Query: 245 ctattgagaaactcctgctaccttacattatgtatgacgaatgctttgacattacagcta 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 ctattgagaaactcctgctaccttacattatgtatgacgaatgctttaacattacagcta 504
Query: 305 acagagacttctacacagtgacatcaaggtcatgattctcctttaagtacattggattgg 364
| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 agagagacttctacacggtgacatcaaggtcacaattctcctttaagtacattggattgg 564
Query: 365 tccaaagtggcttactgaaataagaaagaaacccccccaaataaatctcaccaacaaccc 424
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 -ccaaagtggcttactgaaataagaaagaaaccccccaaaataaatctcaccaacaaccc 623
Query: 425 aacattctgaaaagttaattgcaaatgcacacaatcctgctattcatcattaattttaga 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 aacattctgaaaagttaattgcaaatgcacacaatcctgcaattcatcattaattttaga 683
Query: 485 aaaatgttcctgtcagacaacacacagaagcctaatttggcaatgctgctagcgttctcc 544
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 684 aaaatgttcctgtcagacaacacacagaagcctaatttggcaatgttgctagtgttctcc 743
Query: 545 atcactggaatgcattacaaagcagagagcagggaggaacagacctggtaccattagggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcactggaatgcattacaaagcagagagcagggaggaacagacctggtaccattagggg 803
Query: 605 cagataatttacagaggtaatatatgttttgatcttcctctaataaagagggtatgagaa 664
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 804 cagataatttacagaggtaatatatgttttgattttcctctaataaagagggtatgagaa 863
Query: 665 ctgttttctttctagtat 682
||||||||||||||||||
Sbjct: 864 ctgttttctttctagtat 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space: 719712
Effective search space used: 719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_a03.g1 MSMg01no477_a03.g1 CHROMAT_FILE:
MSMg01no477_a03.g1 PHD_FILE: MSMg01no477_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:19 2005
(245 letters)
>mm_chr3_80761834_80762478
Length = 645
Score = 412 bits (213), Expect = e-119
Identities = 237/245 (96%)
Strand = Plus / Minus
Query: 1 ctataagaacacatatttcttaccttgttccattaccgtaaactcaccccaaagggttcc 60
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 445 ctataagaacacacatttcttaccttgttccattaccataaactcaggtcaaagggttcc 386
Query: 61 taacatgctttggatacatcgtttggtacatagacatatccaataattatccagagacta 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 taacatgctttggatacatcgtttggtacatagacatatccaataattattcagagacta 326
Query: 121 caggacaaacattatccaatttaacgggaaaaattaaatatagtatccaaatcccttcct 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggacaaacattatccagtttaacgggaaaaattaaatatagtatccaaatcccttcct 266
Query: 181 acaatgaaaatcccaacccccaatatacaattgctagcatttcttcataaatattcaaag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 acaatgaaaatcccaacccccaatatacaattgctagcatatcttcataaatattcaaag 206
Query: 241 aatta 245
|||||
Sbjct: 205 aatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
