NTTTATACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGCCCCATGGTAAGGGGCTGGGTAAGGGGCTTTGCAGA
GTGTGTGCTTCTTAGGGCAGAAGCTCTTAGAGATGGAATCAGTGCCCCTA
CAAAATGGGTTCAGGAACTCCCAGTCTCTTCCCTTCAAAAAGGGAAGACA
ATTCCTAACTGGACATGTTAATTGATGACACCTTTACCTCAGAGTTTCCA
AGCTCCAGAATTATGTTAATGAACTTTGATTATTAGGTATGTCCCAATAT
TGATTTGTAATGAGTAGAGGGGGATCTCTAAGCACAACAAAAGCTGAGTA
ATAAGAAGATTTGAAGGTTTAATTTCTAAGTACCTTTTCTAATAATTTGT
GGAAATTACCTAGTAAAACATCAAGGAGGAGTTAGATGTGTGGATCATAT
TCAAAAGTCTCTGGCCATATCCCACTGCTCTCTTGATACTTAATTTTTGT
TAATAGGCTAAGGATTATCTCTCTTTAAATAAACAAATATGTCAGTGTGT
GTGCTTATGTTCACACAGTACTATAGATGACAGAAGAGTACATGGGATGT
TCCATTACTCAAGTTATAGATGATTGTGAGATGCTGTGTAGGTGCTGAAA
ACTGAACCTGGGGTATTTAAGAACATCAAATGCCCTTCCCTAGTGAGACA
TCTCTCTAGCCCCTTTTGACATTTCTTATCTGGGAA

ACATNTGGTAAACCNNGGNGGGCCCCCCCGTACAAANACCTTTTTTNGGG
CCATNNAAATTATCAAGCCACCACCACTCTAANAGATTTTTCTTCGCCCC
TCCTCCCANGGAAAAAAACCCGAGACCCCCACTTCCACTANCTCTCTGGT
TCCNCCANNTNGNNNNNNNNNCTTCCCCCCCCCCCCCCCCCCAACCNGNN
TTATCACCCCCCCCCCCCCCCACCTACTCTTATCCGTTNNNCCCCAACCC
CNAAACAACCTCCCTAAAACCCCTCAAAAACTCTTAATTAACCCCCCGCA
CCCNACCCGNNNNNNNNGNGACCCTTTNNNNCCCCCTCTCTANTTTTNCC
CCACCCCCCCCCCCTTNNNCNNCCTCCCCCCCCCCAAAAAACCCCCNCCC
CCCCNCCCCCNCCACATCCCCCCCCCCCCCCCCCCCCCCCCTNNNNCCCC
TCNNNCCNTCTCCAATCCCCCCTTCCCCCCCTCNNNCCCCAAATCCCCCC
CCNCNNNNNNNNNCCTGANAAAACCCCCCCCACAACCCCCCCCCCCCCCC
CNCCNTTCCCCCCCCNNCCCCCCCCCCNCCCCNNCNCNNNCCCCCCCCCC
CCCCCCNCCTCCCCACTTNNCTCCCCCCCCCCCCCCCCCCCTCNNCCCCC
CCCCTCCCCCCCNTCCCCCTCCCCCCCCNNNNNNCCCCTCCCCTCCCTCC
CCCCNACACNCCCCCCCCCCCCCCCCCCCCCCCCCCATCCCTCCTCCCCC
TTCCCCCNCCCCCTTCCTCCNTTTCCCCCCCTCCTTCCCCCCCCCCCCCC
CCNNCNCCCCCCCTTCTCTCTCCCCTCTCCCCCNCCCCCCCCCCCCCCTC
CCACCCACACCAATAT

Query= MSMg01no477_e01.b1 MSMg01no477_e01.b1 CHROMAT_FILE:
MSMg01no477_e01.b1 PHD_FILE: MSMg01no477_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:38 2005
         (686 letters)



>mm_chr3_158059231_158060316
          Length = 1086

 Score = 1274 bits (659), Expect = 0.0
 Identities = 677/683 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagccccatggtaaggggctgggtaaggggctttgcagagtgtgtgcttctt 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattctcagccccatggtaaggggctgggtaagaggctttgcagagtgtgtgcttctt 263

                                                                       
Query: 64  agggcagaagctcttagagatggaatcagtgcccctacaaaatgggttcaggaactccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggcagaagctcttagagatggaatcagtgcccctacaaaatgggttcaggaactccca 323

                                                                       
Query: 124 gtctcttcccttcaaaaagggaagacaattcctaactggacatgttaattgatgacacct 183
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttttttcccttcaaaaagggaagacaattcctaactggacatgttaattgatgacacct 383

                                                                       
Query: 184 ttacctcagagtttccaagctccagaattatgttaatgaactttgattattaggtatgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacctcagagtttccaagctccagaattatgttaatgaactttgattattaggtatgtc 443

                                                                       
Query: 244 ccaatattgatttgtaatgagtagagggggatctctaagcacaacaaaagctgagtaata 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaacattgatttgtaatgagtagagggggatctctaagcacaacaaaagctgagtaata 503

                                                                       
Query: 304 agaagatttgaaggtttaatttctaagtaccttttctaataatttgtggaaattacctag 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 agaagatttgaaggtttaatttctaagtaccttttctaataatttgtagaaattacctag 563

                                                                       
Query: 364 taaaacatcaaggaggagttagatgtgtggatcatattcaaaagtctctggccatatccc 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 taaaacatcaaggaggagttagatgtgtggatcacattcaaaagtctctggccatatccc 623

                                                                       
Query: 424 actgctctcttgatacttaatttttgttaataggctaaggattatctctctttaaataaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgctctcttgatacttaatttttgttaataggctaaggattatctctctttaaataaa 683

                                                                       
Query: 484 caaatatgtcagtgtgtgtgcttatgttcacacagtactatagatgacagaagagtacat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaatatgtcagtgtgtgtgcttatgttcacacagtactatagatgacagaagagtacat 743

                                                                       
Query: 544 gggatgttccattactcaagttatagatgattgtgagatgctgtgtaggtgctgaaaact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggatgttccattactcaagttatagatgattgtgagatgctgtgtaggtgctgaaaact 803

                                                                       
Query: 604 gaacctggggtatttaagaacatcaaatgcccttccctagtgagacatctctctagcccc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaacctggggtatttaagaacatcaaatgcccttccctagtgagacatctctctagcccc 863

                                  
Query: 664 ttttgacatttcttatctgggaa 686
           |||||||||||||||||||||||
Sbjct: 864 ttttgacatttcttatctgggaa 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)