Query= MSMg01no477_h03.b1 MSMg01no477_h03.b1 CHROMAT_FILE:
MSMg01no477_h03.b1 PHD_FILE: MSMg01no477_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:53 2005
(573 letters)
>mm_chr3_28292920_28293890
Length = 971
Score = 946 bits (489), Expect = 0.0
Identities = 547/567 (96%), Gaps = 6/567 (1%)
Strand = Plus / Minus
Query: 1 ggatgactgcactgtataaactatgtttccccacaaactcttgcaatatcttctactagc 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggatgactgcactgtataaac--tgtttccccacaaactcttgcaatatcttctactagc 558
Query: 61 actcacaagcaagcattgcatctgaagggacggtcagcatccttttagggacagagataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actcacaagcaagcattgcatctgaagggacggtcagcatccttttagggacagagataa 498
Query: 121 acagtagtgtgtccgcttccttatgtaaaaatattctcccaaatgccaagctctaagaag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acagtagtgtgtccacttccttatgtaaaaatattctcccaaatgccaagctctaagaag 438
Query: 181 actaatatgagacaatcttcttgaggcaaaatgatgcagaactgagtatgaccagggcat 240
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 437 actaatatgagacaatcttcttgaggcaaaatgatgcagaactgagtgtgactagggcag 378
Query: 241 gttacacctccttcacagctctgtggcagcaaataagcacaagcagttgttattgtatgc 300
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 377 gtaacacctccttcacagctctgtggcagcaaataagcacgagcagttgttattgtatgc 318
Query: 301 agtaacgttttgctgtaaggttagg-tcgataaaatagttccttatttatgtgttgggtt 359
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct: 317 agtaacgttttgctgtaaggttaggct-gataaaatagttccttatttatttgttgggtt 259
Query: 360 gtttagtccatagagaacttttcaaatttctttttttaataccggtttgaattttgagat 419
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 258 gtttagtccatagagaactttccaaatttcttttttcaataccggtttgaattttgagat 199
Query: 420 tttaaattatttttaattttgtacccgtgcatttttt-atgtatagtgcaggcacactct 478
||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 198 tttaaattatttt-aattttgtacctgtgcatttttttatgtatagtacaggcacactct 140
Query: 479 aaagcatctggtgaggatgtagaatcccctagaaactggaaacagaaaccactaagagct 538
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct: 139 aaagcatctggtgaggatgtagaatcccctagaaactgggaacagaaaccactgagtgct 80
Query: 539 gcctgaactaggcgctgggaactgagt 565
|||||||||||||||||||||||||||
Sbjct: 79 gcctgaactaggcgctgggaactgagt 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 971
Length adjustment: 10
Effective length of query: 563
Effective length of database: 961
Effective search space: 541043
Effective search space used: 541043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_h03.g1 MSMg01no477_h03.g1 CHROMAT_FILE:
MSMg01no477_h03.g1 PHD_FILE: MSMg01no477_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:53 2005
(477 letters)
>mm_chr3_28100882_28101758
Length = 877
Score = 814 bits (421), Expect = 0.0
Identities = 445/455 (97%), Gaps = 6/455 (1%)
Strand = Plus / Plus
Query: 1 accccgtagagtaggctggccttgaactccgagattctcctgtttctgcctctgaaatat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgtagagtaggctggccttgaactccgagattctcctgtttctgcctctgaaatat 260
Query: 61 tgggattaagtgtgtgtgccatcatgggactgagtggtagagtagagcctatgtgttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaagtgtgtgtgccatcatgggactgagtggtagagtagagcctatgtgttctt 320
Query: 121 acctcacacaaaaaagtaaccagtacgtgaagtttagatatgctaattagctggattgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctcacacaaaaaagtaaccagtacgtgaagtttagatatgctaattagctggattgtg 380
Query: 181 gtattcacagttcattcgtatcaaagcaccatcatctatactataaatacataccttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattcacagttcattcgtatcaaagcaccatcatctatactataaatacataccttttt 440
Query: 241 atttatcaattattcctcaagggcactggaaaaagacagtggctcttcccttatgaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttatcaattattcctcaagggcactggaaaaagacagtggctcttcccttatgaaact 500
Query: 301 aaacagaatcccaaataattcttaccactgcagttatgctctaagctactgagctctgag 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aaacagaatcccaaataattcttaccactgcagttatgttctaagctactgagctctgag 560
Query: 361 atgcagcactctaagatgctaagtcctaagacagagttctaagacactgagttctaagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcagcactctaagatgctaagtcctaagacagagttctaagacactgagttctaagac 620
Query: 421 actgagttctaagacactgagttct--aagacact 453
||||||| || ||||| || ||| ||||||||
Sbjct: 621 actgagtgcttagaca--ga--tctttaagacact 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
