CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTGTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTGTTGAGTTCTGTATATATGTTGGATATGAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCCTTTAT
CCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATACAGGATGAGGAAGGAACACTGG
AGATTGAGCCAACTGAGGCGACACAGAAAAAGGAATACAGAACAAGGCAA
AAGCACACACATATATTGTAATATGTGACTTCACCACTGCAACATTTCTA
GTTGATATAAACTACACATTTTCAAATTATTGCACATTACAGCTATTTGC
TAAACAATCAGATATATACCTATGTATTAAAGACATATTTTTATGTACAT
TATTGTACATAAAAATAATAATGTACATAAAGACATTATTTATGTATAAT
CCCTCAGATGAGAAACATAAAAAATATGTACACACTTCTAACTTTATAAA
CTTCTGGCATATGAATATAATACTGCAGGATCTCTGAGGTAGAGGCCAGC
CTGACCTATACAGGGAGGTCCATGCTTGTCTGGGCATTTAGTGAGACCCT
GTCTCATCACAAAATAACAACAAAACAAAACTTCTAAAAGACTTCCAATA
AATAAAAATAACACTAATTTCAAGTAAGAAGTCCTGATCTTACCCTGTCT
AGTTCCAGTGTAAACTTCTGGTCCCACGACTGATTTGAAATGGGTTTCCA
GCTAGTTTGACCAACCACAGTATTATCTAGCTTCAAAACAGCACAAACAT
CATCTGTAATTACAATTTTAAGTTGGGGTAAAAACTTTTAACTGTTAAAA
GAAATTATCACTAATTTTAGCATGAAAAA

Query= MSMg01no477_k22.g1 MSMg01no477_k22.g1 CHROMAT_FILE:
MSMg01no477_k22.g1 PHD_FILE: MSMg01no477_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:11 2005
         (587 letters)



>mm_chr3_142482833_142483819
          Length = 987

 Score =  891 bits (461), Expect = 0.0
 Identities = 531/587 (90%), Gaps = 51/587 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacaggatgaggaaggaacactggagattgagccaactgaggcgacacagaaaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aatacaggatgaggaaggaacactggagattgagccaactgaggcgatacagaaaaagga 260

                                                                       
Query: 61  atacagaacaaggcaaaagcacacacatatattgtaatatgtgacttcaccactgcaaca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atacagaacaaggcaaaagcacacacatatattgtagtatgtgacttcaccactgcaaca 320

                                                                       
Query: 121 tttctagttgatataaactacacattttcaaattattgcacattacagctatttgctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tttctagttgatataaactacacattttcaaattattgcacattatagctatttgctaaa 380

                                                                       
Query: 181 caatcagatatatacctatgtattaaagacatatttttatgtacattattgtacataaaa 240
           ||||||||||||||||||||||||||||||                              
Sbjct: 381 caatcagatatatacctatgtattaaagac------------------------------ 410

                                                                       
Query: 241 ataataatgtacataaagacattatttatgtataatccctcagatgagaaacataaaaaa 300
                          ||      ||||||||| |||||||||||||||||||||||||||
Sbjct: 411 ---------------aa------atttatgtacaatccctcagatgagaaacataaaaaa 449

                                                                       
Query: 301 tatgtacacacttctaactttataaacttctggcatatgaatataatactgcaggatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatgtacacacttctaactttataaacttctggcatatgaatataatactgcaggatctc 509

                                                                       
Query: 361 tgaggtagaggccagcctgacctatacagggaggtccatgcttgtctgggcatttagtga 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 510 tgaggtagaggccagcctgacctatacagggaggtccatgcttgtctgagcatttagtga 569

                                                                       
Query: 421 gaccctgtctcatcacaaaataacaacaaaacaaaacttctaaaagacttccaataaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaccctgtctcatcacaaaataacaacaaaacaaaacttctaaaagacttccaataaata 629

                                                                       
Query: 481 aaaataacactaatttcaagtaagaagtcctgatcttaccctgtctagttccagtgtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaataacactaatttcaagtaagaagtcctgatcttaccctgtctagttccagtgtaaa 689

                                                          
Query: 541 cttctggtcccacgactgatttgaaatgggtttccagctagtttgac 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttctggtcccacgactgatttgaaatgggtttccagctagtttgac 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)