Query= MSMg01no477_p17.b1 MSMg01no477_p17.b1 CHROMAT_FILE:
MSMg01no477_p17.b1 PHD_FILE: MSMg01no477_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:35 2005
(686 letters)
>mm_chr3_59165663_59166748
Length = 1086
Score = 1280 bits (662), Expect = 0.0
Identities = 677/682 (99%)
Strand = Plus / Minus
Query: 5 gaattccacagatgttaacgtcgcatgccttgaccttgaggaacttagccatctgcactc 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattccacagatgttaaagtcgcatgccttgaccttgaggaacttagccatctgcactc 827
Query: 65 tgagcagaattctgctgtaactcccaattgccgtccactgaaacttaggtgggtggaagt 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 826 tgagcagaattctgctgtaactcccaattgccgtccattgaaacttaggtgggtggaagt 767
Query: 125 gaaatcagccccttgcgtccttgggaaaatttggtgtactataccacatgttttctattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gaaatcagccccttgcgtccttgggaaaatttggtgtactataccacatgttttctattg 707
Query: 185 cataagatgatgcagccatttcccttcaagtaccaaactgacattcatttaattattcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cataagatgatgcagccatttcccttcaagtaccaaactgacattcatttaattattcta 647
Query: 245 aattaggctttcagtcaaaatcctgttaatattgccctttagcaaaagatctacagcaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aattaggctttcagtcaaaatcctgttaatattgccctttagcaaaagatctacagcaac 587
Query: 305 catgggtaagcatttttgagtccaggaaaatgaaggaattgttctggatatatatttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 catgggtaagcatttttgagtccaggaaaatgaaggaattgttctggatatatatttttt 527
Query: 365 gccatactttcttaacaagattagtaactaaattgaaatctacagccaagggaatacttc 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 526 gccatactttcttaacaagattagtaattaaattgaaatctacagccaagggaatacttc 467
Query: 425 ttatgctttctcccattgaacaaatgtctaaataattatctgcagatgtgtattaaaatg 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 466 ttatgctttctcccattgaacaaatgtctaaataattatctgcagatgtgcattaaaatg 407
Query: 485 tgtagagagctaaattgccctcagtgctaccttgtatgaaaatgtatcctgaggttctct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtagagagctaaattgccctcagtgctaccttgtatgaaaatgtatcctgaggttctct 347
Query: 545 ttgcatactaggaacttgagctccaaatagctccaaataaaatcctcccagggaaaagaa 604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttgcatactaggaacttgagctacaaatagctccaaataaaatcctcccagggaaaagaa 287
Query: 605 aaatcctaagccaacagttttactttagtactccattcctgaaccacctttagcctttta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaatcctaagccaacagttttactttagtactccattcctgaaccacctttagcctttta 227
Query: 665 gagtgtaacggagctgttagaa 686
||||||||||||||||||||||
Sbjct: 226 gagtgtaacggagctgttagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_p17.g1 MSMg01no477_p17.g1 CHROMAT_FILE:
MSMg01no477_p17.g1 PHD_FILE: MSMg01no477_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:35 2005
(657 letters)
>mm_chr3_58970923_58971986
Length = 1064
Score = 1143 bits (591), Expect = 0.0
Identities = 634/657 (96%), Gaps = 16/657 (2%)
Strand = Plus / Plus
Query: 17 cccatttaggttattgacttgaggaagggtttgagagggggctgttggga---------g 67
||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 208 cccatttcggttattgacttgaggaagggtttgagagggggctgttgggaagggctagag 267
Query: 68 gtaggacggggaggagggaacatgatatatttctattttaattaacacatatcaaataaa 127
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 gtaggacggggaggagggaacatgatataattctattttaattaacacatatcaaataaa 327
Query: 128 tagtatataaactataaaacaatacagggcatggcccctttctttgagaaacccattatc 187
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 328 tagtatataaactataaaacaatatagggcatggcccctttccttgagaaacccattatc 387
Query: 188 aaaaaggaaaaaaaaagttaaa-----gagtattttttgtttgtttataatatcttgatt 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaaggaaaaaaaaagttaaaataaagagtattttttgtttgtttataatatcttgatt 447
Query: 243 tattctaaacagttttagttccctgagcatcttcccatttccttttgtggaattgtgaca 302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tatgctaaacagttttagttccctgagcatcttcccatttccttttgtggaattgtgaca 507
Query: 303 ttcaagttcactcctgtttatttttttctcaaagcttccagccccacagcccaccctgtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttcaagttcactcctgtttatttttttctcaaagcttccagccccacagcccaccctgtt 567
Query: 363 aatgactcacccaacaggacatgctcatagttgtactgtttccaggcagcggatctgcct 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatgactcacccaacagtacatgctcatagttgtactgtttccaggcagcggatctgcct 627
Query: 423 tgttagtaataagactggttatatataaatatcccttgtgtatttatactacaaacagag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgttagtaataagactggttatatataaatatcccttgtgtatttatactacaaacagag 687
Query: 483 ggcttctaacacatggaatctcaaaatatgtctattattgtttccagtcagttcttatct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggcttctaacacatggaatctcaaaatatgtctattattgtttccagtcagttcttatct 747
Query: 543 ggcctgtcatcaactgctcataacaactttcctttttacattctgattctataaatgttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ggcctgtcatcaactgctcataacaactttcctttttacattctgattctataaatgttc 807
Query: 603 catcttgttctttactcaaaagtccaattatttgtgactatttgg--tgtgtgtgtg 657
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 808 catcttgttccttactcaaaagtccaattatttgtgactatttgggatgtgtgtgtg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1064
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1054
Effective search space: 681938
Effective search space used: 681938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
