Query= MSMg01no478_c24.b1 MSMg01no478_c24.b1 CHROMAT_FILE:
MSMg01no478_c24.b1 PHD_FILE: MSMg01no478_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:51 2005
(644 letters)
>mm_chr3_127728087_127729131
Length = 1045
Score = 1120 bits (579), Expect = 0.0
Identities = 631/657 (96%), Gaps = 16/657 (2%)
Strand = Plus / Plus
Query: 3 ggaattcaagtgttctacgccccaaatccaagacgattctttgactattcaactatggcg 62
||||||||||||| | | ||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 190 ggaattcaagtgtccaaggccccaaatcccagacaattctttgactattcaactatggcg 249
Query: 63 tttggacgttatacttgcttatgtgttcctctgctttcctcttcactgacaattaatgga 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttggacgttatacttgcttatgtgttcctctgctttcctcttcactgacaattaatggg 309
Query: 123 tgcttagtataggaaaacctttatgttgatatagggatcagaacaagatgaaaagaagcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgcttagtataggaaaacctttatgttgatatagggatcagaacaagatgaaaagaagcc 369
Query: 183 ccgagagaatgcctatgtgctaagaacacacaactttagaacttggacgcatgacctgga 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccgagaggatgcctatgtgctaagaacacacaactttagaacttggacgcatgacctgga 429
Query: 243 tcactccatgttaaagacaatagcttttttgtttatctgtctctcctacttccagggttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcactccatgttaaagacaatagcttttttgtttatctgtctctcctacttccagggttt 489
Query: 303 ctccctgtcctataccgctgctgtctctaatgcacaaagcgcatgatgtggtgaaaggag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctccctgtcctataccgctgctgtctctaatgcacaaagcgcatgatgtggtgaaaggag 549
Query: 363 ccacttagctggaaacctggttcagactgctcacctgacatgagaatttagagttcagca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccacttagctggaaacctggttcagactgctcacctgacatgagaatttagagttcagca 609
Query: 423 -------------tgtacaatgtcacatggtgtcatcaggctggatcttggaacacacat 469
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gttttaggcagcatgtacaatgtcacatggtgtcatcaggctggatcttggaacacacat 669
Query: 470 tctaacaaagtactcttcaatttctcaagaaaaaaa--tactttggagtaactggatata 527
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 670 tctaacaaagtactcttcaatttctcaagaaaaaaaaatactttggagtaactggatata 729
Query: 528 aggcctgactcttacattaaaccatgtagaaggctctgcgaattgtattaaggaaaactt 587
||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 730 aggcctgaca-ttacattaaatcatgtagaaggctctgcgaatcgtattaaggaaaactt 788
Query: 588 gaacttttgtcttttcttccacgggcagtgaaagatgccttgatttttatggagaag 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaacttttgtcttttcttccacgggcagtgaaagatgccttgatttttatggagaag 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_c24.g1 MSMg01no478_c24.g1 CHROMAT_FILE:
MSMg01no478_c24.g1 PHD_FILE: MSMg01no478_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:51 2005
(673 letters)
>mm_chr3_127908569_127909641
Length = 1073
Score = 1249 bits (646), Expect = 0.0
Identities = 667/674 (98%), Gaps = 2/674 (0%)
Strand = Plus / Minus
Query: 1 ctgaattcttatttaagagagcctcaaaaacattccaggttcaggcagtacaaattaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ctgaattcttatttaagagagcctcaaaaacattccaggttcaggcagtacaaattaaag 814
Query: 61 ggcatgcagatccctatttgagcttcaaaacttatttctctagcacctttgtagtttcct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 813 ggcatgcagatccctatttgagcttcaaaacttatttctctagcacttttgtagtttcct 754
Query: 121 attatattgtgattacaaatgattcagaactatagatttatacggtatacactttgataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 attatattgtgattacaaatgattcagaactatagatttatacggtatacactttgataa 694
Query: 181 tatgtgtacatatataggtatattattccttatactttaaaaatcagaaaatgatatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tatgtgtacatatataggtatattattccttatactttaaaaatcagaaaatgatatata 634
Query: 241 gattgagatccatcatttagtttcatcaaagggcctatgtctacttagccatgctaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gattgagatccatcatttagtttcatcaaagggcctatgtctacttagccatgctaattt 574
Query: 301 tgagtgaggccacaagaattattgacttattc-gaaagatgctttcccagcatctggtgc 359
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 573 tgagtgaggccacaagaattattgacttattcag-aagatgctttcccagcatctggtgc 515
Query: 360 aatcagggttctgctgtgagtgatgaggaaggcagcagtgaacaagttacagaaacgcaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aatcagggttctgctgtgagtgatgaggaaggcagcagtgaacaagttacagaaacgcag 455
Query: 420 ctcagcgacagccccctcatccctgtgggcagtaactgggttccaatttagagaatattg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctcagcgacagccccctcatccctgtgggcagtaactgggttccaatttagagaatattg 395
Query: 480 cccagcaccactgcttacaggtgggacacctcgtgtcacattgccttgcctcctacattg 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cccagcgccactgcttacaggtgggacacctcgtgtcacattgccttgcctcctacattg 335
Query: 540 ttgacttagtgtccaaatatctagaagctctggaagatgagaatattagtgtgggcctta 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 ttgacttagtgtccaaatatttagaagctctggaagatgagaatattagtgtgggtctta 275
Query: 600 gagggcttgttgtaatttactgaaagcacttaaatgcttcatcgacaccaacactagtca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gagggcttgttgtaatttactgaaagcacttaaatgcttcatcgacaccaacactagtca 215
Query: 660 ttagggatagctaa 673
||||||||||||||
Sbjct: 214 ttagggatagctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
