XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAGA
TTTCAAAAATGAGAGCAGCCAGCCTGGCTGCACAATGAAAGCCAATCTAC
AAACCTAGTAATAATGACTCTAAGACTTGAATCTTTACCCATAATGGATC
AAATTGGATATTAGAAACTGTAGCTTGCTCTTGGAGCTTCTCTTTTTCTA
GAAATAGTAAATTCTAGATATCGCCAGGTCAGTAAGAGCAATAATATTGG
CACAAAACTCGAATGTTACAGTATATCTACAACCCTACACTGCTCTGACT
TGGAAATGTTGTGAGGTCTGGCCTTTCACAAGCCCTGGGTGCTGTCTCTG
CTGCTTTGGCCTATTTTCCTGATAAAGAAACATTTTCTATATATGACATT
GAGCTATACTATAGTAAGATAATCTGTGTTAAAATGTGATTTGTGTTTCA
TGTGTTTCCCAAATTGTATATTATATCTTGGGTATTCTAAGTTTCTGGGC
TTATCACTTATCAGTGAGTACATATCACGTGAGTTCTTTTGTGATTGGGT
TACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATT
TCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATG
TACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTT
CCTGCTTCTGGCTACTATAAATGAAACTCTATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTATTTTCTTCTGACTCTTAGAGCAGATTTAAAGG
CACAAACTATTCAGATAGACTCTGTCATTTCTGCAAACAAATAGAGGTCA
GAATTTCCATGCTCTGGTTTTCTTTCAAATATTGAAAAAAATACTCATTT
ACATTCTATTGATATACTTCCTCGTGATAAAGAACAGTGATTTCACATGT
TTGAGTATTTATGTGAACACCAAATATGTAGACATATTTAAGCAGATACA
CCTGCCTTGTGGTTTTGCCTTTTGTTTCAAGAGCCTATGAATAATTGTGC
TTTGGAAAAACATCAGACACTTCATCATCAAAAAAGTCATCTTTGCTACT
TCAGCAGATATTTGCATCCTAATTTATAGTAAACAGCTACTTCAGAGACA
TCTGCTTCCGAATGAATTACATGTGCTTCTCATGGCTATCAACTTTGGAA
CCCCTCTACTAACAGTCTGAGATCTACTACCTGTCGGAGAGCGAGAGCAC
TCAGTCGAGCAATCCACAACTGGAGAGGATTAGCTTACTGCTGCCGCTAT
CAGCAAAACAGCACGAAGCAGACAGTTCATTTTACAGAAACTTAATGGAG
TGTATGGCACTGGCTGTTTAATACAAGCACTGTCAAGGCATCTAAGCAAA
AGTCTCAGCTGTCATCACTGACAAGCTGAGTGGAA

Query= MSMg01no478_e03.b1 MSMg01no478_e03.b1 CHROMAT_FILE:
MSMg01no478_e03.b1 PHD_FILE: MSMg01no478_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:56 2005
         (676 letters)



>mm_chr3_25111568_25112643
          Length = 1076

 Score =  756 bits (391), Expect = 0.0
 Identities = 391/391 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  aaaaatgagagcagccagcctggctgcacaatgaaagccaatctacaaacctagtaataa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaaatgagagcagccagcctggctgcacaatgaaagccaatctacaaacctagtaataa 419

                                                                       
Query: 80  tgactctaagacttgaatctttacccataatggatcaaattggatattagaaactgtagc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgactctaagacttgaatctttacccataatggatcaaattggatattagaaactgtagc 359

                                                                       
Query: 140 ttgctcttggagcttctctttttctagaaatagtaaattctagatatcgccaggtcagta 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgctcttggagcttctctttttctagaaatagtaaattctagatatcgccaggtcagta 299

                                                                       
Query: 200 agagcaataatattggcacaaaactcgaatgttacagtatatctacaaccctacactgct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agagcaataatattggcacaaaactcgaatgttacagtatatctacaaccctacactgct 239

                                                                       
Query: 260 ctgacttggaaatgttgtgaggtctggcctttcacaagccctgggtgctgtctctgctgc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctgacttggaaatgttgtgaggtctggcctttcacaagccctgggtgctgtctctgctgc 179

                                                                       
Query: 320 tttggcctattttcctgataaagaaacattttctatatatgacattgagctatactatag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tttggcctattttcctgataaagaaacattttctatatatgacattgagctatactatag 119

                                          
Query: 380 taagataatctgtgttaaaatgtgatttgtg 410
           |||||||||||||||||||||||||||||||
Sbjct: 118 taagataatctgtgttaaaatgtgatttgtg 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_e03.g1 MSMg01no478_e03.g1 CHROMAT_FILE:
MSMg01no478_e03.g1 PHD_FILE: MSMg01no478_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:56 2005
         (622 letters)



>mm_chr3_24918248_24919269
          Length = 1022

 Score = 1180 bits (610), Expect = 0.0
 Identities = 619/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attattttcttctgactcttagagcagatttaaaggcacaaactattcagatagactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattttcttctgactcttagagcagatttaaaggcacaaactattcagatagactctg 260

                                                                       
Query: 61  tcatttctgcaaacaaatagaggtcagaatttccatgctctggttttctttcaaatattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttctgcaaacaaatagaggtcagaatttccatgctctggttttctttcaaatattg 320

                                                                       
Query: 121 aaaaaaatactcatttacattctattgatatacttcctcgtgataaagaacagtgatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaatactcatttacattctattgatatacttcctcgtgataaagaacagtgatttc 380

                                                                       
Query: 181 acatgtttgagtatttatgtgaacaccaaatatgtagacatatttaagcagatacacctg 240
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acatgtttgagtatatatgtgaacaccaattatgtagacatatttaagcagatacacctg 440

                                                                       
Query: 241 ccttgtggttttgccttttgtttcaagagcctatgaataattgtgctttggaaaaacatc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgtggttctgccttttgtttcaagagcctatgaataattgtgctttggaaaaacatc 500

                                                                       
Query: 301 agacacttcatcatcaaaaaagtcatctttgctacttcagcagatatttgcatcctaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacacttcatcatcaaaaaagtcatctttgctacttcagcagatatttgcatcctaatt 560

                                                                       
Query: 361 tatagtaaacagctacttcagagacatctgcttccgaatgaattacatgtgcttctcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagtaaacagctacttcagagacatctgcttccgaatgaattacatgtgcttctcatg 620

                                                                       
Query: 421 gctatcaactttggaacccctctactaacagtctgagatctactacctgtcggagagcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctatcaactttggaacccctctactaacagtctgagatctactacctgtcggagagcga 680

                                                                       
Query: 481 gagcactcagtcgagcaatccacaactggagaggattagcttactgctgccgctatcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcactcagtcgagcaatccacaactggagaggattagcttactgctgccgctatcagc 740

                                                                       
Query: 541 aaaacagcacgaagcagacagttcattttacagaaacttaatggagtgtatggcactggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaacagcacgaagcagacagttcattttacagaaacttaatggagtgtatggcactggc 800

                                 
Query: 601 tgtttaatacaagcactgtcaa 622
           ||||||||||||||||||||||
Sbjct: 801 tgtttaatacaagcactgtcaa 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)