Query= MSMg01no478_e18.b1 MSMg01no478_e18.b1 CHROMAT_FILE:
MSMg01no478_e18.b1 PHD_FILE: MSMg01no478_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:59 2005
(681 letters)
>mm_chr3_116184238_116185317
Length = 1080
Score = 1154 bits (597), Expect = 0.0
Identities = 660/685 (96%), Gaps = 10/685 (1%)
Strand = Plus / Minus
Query: 1 gaagcaagctgagcaccagtgtttatcactgatcagtcctgactgtggacactatccgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaagcaagctgagcaccagtgtttatcactgatcagtcctgactgtggacactatccgac 799
Query: 61 caactgccttgcacatttgctgtcctgacatcacacgatggactgcaccttcaagctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caactgccttgcacatttgctgtcctgacatcacacgatggactgcaccttcaagctgta 739
Query: 121 agccacaacagacccttcctcccttaagatgttcttgtcagatgttcgaccataccgtga 180
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 738 agccacaacagacccttcctcccttaagatgttcttgtcagatgttcaatcataccgtga 679
Query: 181 ggaaaagtgacaagagtccagtgcctacttacagagctctatttcaataccatttcgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 678 ggaaaagtgacaagagtccagtgcctacttacagagctctatttcaatagcatttcgttt 619
Query: 241 tggcctcttttattcaggacaactgtttttacaaagatgtttttatctactggaaagatt 300
||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tggcc-caataagtcaggacaactgtttttacaaagatgtttttatctactggaaagatt 560
Query: 301 tgccctaagttccatcagttaccatagcctcgttggggtggtcatgtctgttctatgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgccctaagttccatcagttaccatagcctcgttggggtggtcatgtctgttctatgcag 500
Query: 361 tcctacttggacattctaaaacagtgacctgtaaagctagccacagtaacaatactttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcctacttggacattctaaaacagtgacctgtaaagctagccacagtaacaatactttta 440
Query: 421 aaagcatttttatttattctttgaagagttcaatctttaaaaaaaaaagtggggg----t 476
||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
Sbjct: 439 aaagcatttttatttattctttgaaaagttcaatctttaaaaaa----ggggggggggat 384
Query: 477 ggctcagcggttaagaacactgactgcttttccaaaggtcccgagttcaaatcccagcaa 536
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 383 ggctcagcggttaagaacactgactgctcttctaaaggtcccgagttcaaatcccagcaa 324
Query: 537 ccaaatggtggctcacaaccattcataacgagatctgatgccctcttctggtgtatctga 596
||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct: 323 ccacatggtggctcacaaccatccgtaacgagatctgatgccctcttctggtgtgtctga 264
Query: 597 agacagctacagtgtacttacatataataaataaataaatctttaaaaaaaaagaaaaaa 656
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 agacagctacagtgtacttacatataataaataaataaatctttaaaaaaaa-gaaaaaa 205
Query: 657 gaaaaattcatacattttctataat 681
|||||||||||||||||||||||||
Sbjct: 204 gaaaaattcatacattttctataat 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_e18.g1 MSMg01no478_e18.g1 CHROMAT_FILE:
MSMg01no478_e18.g1 PHD_FILE: MSMg01no478_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:59 2005
(691 letters)
>mm_chr3_116000933_116002024
Length = 1092
Score = 1276 bits (660), Expect = 0.0
Identities = 684/692 (98%), Gaps = 1/692 (0%)
Strand = Plus / Plus
Query: 1 cagagacagagatgtaacaactgttttcacaagtatttaaagcgtgcctactcccatcag 60
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cagagacagagatgtagcaactgttttcacaagcatttaaagcgtgcctactcccatcag 260
Query: 61 tggggagacacacaacagctgggggtgggagcaaaagagccaagtgtcggaaaacacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggagacacacaacagctgggggtgggagcaaaagagccaagtgtcggaaaacacagg 320
Query: 121 taaactcaggatttgtagaatggcattctgaagtgaagaggacaca-tgttacccacaag 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 taaactcaggatttgtagaatggcattctgaagtgaagaggacacaatgttacccacaag 380
Query: 180 tggaggtgctctacgaactgaaaggtttaaagatgaggctacctaaatgcacaggatggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggtgctctacgaactgaaaggtttaaagatgaggctacctaaatgcacaggatggc 440
Query: 240 gaggagctggtatgcctctggctttttaaggcacgtagtttgtctccctgcgttacgttg 299
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggagcggggatgcctctggctttttaaggcacgtagtttgtctccctgcgttacgttg 500
Query: 300 ttcttaatttccatatcttcgtcttcaaaattattctgaaaaacaggcatgtcccatagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttaatttccatatcttcgtcttcaaaattattctgaaaaacaggcatgtcccatagg 560
Query: 360 aaggtcattacaaacagtttagctttatgctgatttcttaatagagcataggtaacctat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtcattacaaacagtttagctttatgctgatttcttaatagagcataggtaacctat 620
Query: 420 aattacagataagagcaaatgagcttacttacaaaacaggaaatgatcttcctgtagctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattacagataagagcaaatgagcttacttacaaaacaggaaatgatcttcctgtagctt 680
Query: 480 cgatcatttaaatgtgttataaactcagcagtaagcatacactcaacatttaaatatatc 539
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ggatcatttaaatgtgttataaactcagcagtaagaatacactcaacatttaaatatatc 740
Query: 540 cgtcaaattccaagtcaaagaagcgtggggctggatatgggagtgtctgaaatatgtcta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgtcaaattccaagtcaaagaagcgtggggctggatatgggagtgtctgaaatatgtcta 800
Query: 600 tggcaatgggtcagaaccaaaaaaactgtcatgtggacacattaggctttggaaaccagc 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggcaatgggtcggaaccaaaaaaactgtcatgtggacacattaggctttggaaaccagc 860
Query: 660 ctggctcaatcctgactataacacatcccaga 691
||||||||||||||||||||||||||||||||
Sbjct: 861 ctggctcaatcctgactataacacatcccaga 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space: 736842
Effective search space used: 736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
