BAC Information

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BAC

Clone NameMSMg01-478E19
Chromosome3 (Build37)
Map Location 64,560,028 - 64,560,668
singlet/doubletsinglet
Overlap gene4933425M15Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478E19.T7 (MSMg01no478_e19.b1)MSMg01-478E19.TJ (MSMg01no478_e19.g1)
ACCAG559448AG559449
length717725
length of high quality
(start - end)		639 (61 - 699)605 (68 - 672)
definitionCHROMAT_FILE: MSMg01no478_e19.b1 PHD_FILE: MSMg01no478_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:59 2005CHROMAT_FILE: MSMg01no478_e19.g1 PHD_FILE: MSMg01no478_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAATTCAC
AGTACCGGAGAGTGGAGGGCTGTAATCATATGGTGGGACAGAACTAAGTT
GGGAGGGGAATTAATGGGTGTCTCTTTTGGGGTTATCAGGGACTAATTTT
ATGGCCGGCTGTAAATGTCTGTGCCCTCTGATTACCTTTTTCTATGATTT
AAATGTGGGTCCCTAATCTCCTTTGAGTTTGCTATTTCTTTAAGGTCTCA
AGGACAGATACCTGGAGACTTTGGCCATTTATCAAGAAGAGTGCTAGTTT
TTGGTGATTTTTAGGTAGGGAGGATATCTCCAGCTAGGGTTTGGGTCCGT
TGGATGTCTACATTAAGGGGGAGTTTTATGGGTAGTGCCATTCTATCTCT
AGTCTGGGTTCCCTGGGAACAGCCAGGGAGTGGGAGGGAGCCCTGAGTTT
GCTGCAGAAGGATGCAGCACAGAAACCAGCTGTCTGCATATCTTGCTTGC
CAAGTGCTAGAGGGAGAATGGGGGATTCTATGGTGGAAAACACAGAAGCA
AACTGCCTGTACACAACACTGAATTCTCTTTGGTGAGACTTTTAAGAAAT
GGGGTAAATATCCACATAGAGCATCAGTAATTCCGGGGGTTACAACAGAG
TATTTTTCTTTCTTTTTTTTTCTGTTTTTTTAAAATTTATCTTTTTACAA
TCCAGATTTTATCCCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAT
CTCAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAACTCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
AAGGAGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTT
CGTTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTTTG
GGGGTTCCTCATAAAATTGGACATAATACTAACAGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAAAATT
GCTAGGCAAATGGATCAACCTGCCTTGCATCATCCTGAGTGAGGTAACCC
AATCACAAAGGAAATCACACAATATGTACTCAGTGATAAGTGGATATTAG
CCCAGAAACTTAGGATAGCTAAGATATAAGATACAATTTGCTAAATGCAT
GAAACTCAAGAAGAACGAAGACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_e19.b1 MSMg01no478_e19.b1 CHROMAT_FILE:
MSMg01no478_e19.b1 PHD_FILE: MSMg01no478_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:59 2005
         (639 letters)



>mm_chr3_64559828_64560868
          Length = 1041

 Score = 1176 bits (608), Expect = 0.0
 Identities = 633/646 (97%), Gaps = 12/646 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggagggctgtaatcatatggtgggacagaactaagttgggaggggaattaatgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agtggagggctgtaatcatatggtgggacagaactaagttgggaggggaattaatgggtg 782

                                                                       
Query: 61  tctcttttggggttatcagggactaattttatggccggctgtaaatgtctgtgccctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctcttttggggttatcagggactaattttatggccggctgtaaatgtctgtgccctctg 722

                                                                       
Query: 121 attacctttttctatgatttaaatgtgggtccctaatctcctttgagtttgctatttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attacctttttctatgatttaaatgtgggtccctaatctcctttgagtttgctatttctt 662

                                                                       
Query: 181 taaggtctcaaggacagatacctggagactttggccatttatcaagaagagtgctagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaggtctcaaggacagatacctggagactttggccatttatcaagaagagtgctagttt 602

                                                                       
Query: 241 ttggtgattttt----aggtagggaggatatctccagctagggtttgggtccgttggatg 296
           |||||||    |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttggtga----tgcagaggtagggaggatatctccagctagggtttgggtccgttggatg 546

                                                                       
Query: 297 tctacattaagggggagttttatgggtagtgccattctatctctagtctgggttccctgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctacattaagggggagttttatgggtagtgccattctatctctagtctgggttccctgg 486

                                                                       
Query: 357 gaacagccagggagtgggagggagccctgagtttgctgcagaaggatgcagcacagaaac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaacagccagggagtgggagggagccctgagtttgctgcagaaggatgcagcacagaaac 426

                                                                       
Query: 417 cagctgtctgcatatcttgcttgccaagtgctagagggagaatgggggattctatggtgg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagctgtctgcatatcttgcttgccaagtgctagagggagaatgggggattctatggtgg 366

                                                                       
Query: 477 aaaacacagaagcaaactgcctgtacacaacactgaattctctttggtgagacttttaag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaacacagaagcaaactgcctgtacacaacactgaattctctttggtgagacttttaag 306

                                                                       
Query: 537 aaatggggtaaatatccacatagagcatcagtaattccgggggttacaacagagtatttt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaatggggtaaatatccacatagagcatcagtaattccgggggttacaacagagtatttt 246

                                                         
Query: 597 tctttctttttttttctg--tttttttaaaattt-atctttttaca 639
           |||||| |||||||||||  ||||||| |||||| |||||||||||
Sbjct: 245 tctttc-ttttttttctgttttttttttaaatttaatctttttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1041
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1031
Effective search space:   648499
Effective search space used:   648499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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