Query= MSMg01no478_f11.b1 MSMg01no478_f11.b1 CHROMAT_FILE:
MSMg01no478_f11.b1 PHD_FILE: MSMg01no478_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:03 2005
(534 letters)
>mm_chr3_73809107_73810040
Length = 934
Score = 919 bits (475), Expect = 0.0
Identities = 499/507 (98%), Gaps = 2/507 (0%)
Strand = Plus / Plus
Query: 1 gcatgtgtcaacaaattatgtaaattactgaataaataagtaacatcttttgaaaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgtgtcaacaaattatgtaaattactgaataaataagtaacatcttttgaaaagaat 260
Query: 61 attgtggggatatggagagtgtttgactgtgaaaataggggcaagtatgatcacatgtct 120
||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 attgtggggatatggggagggtttgactgtgaaaat-ggggcaagtatgatcacatgtca 319
Query: 121 ccataactgtgtagtgtatggtattctcaaacataaatataaattaaaagacaaacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccataactgtgtagtgtatggtattctcaaacataaatataaattaaaagacaaacaaaa 379
Query: 181 atctcaaatatgcataccttgagccatcataactgctttgttttcacattcattctgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atctcaaatatgcataccttgagccatcataactgctttgttttcacattcattctgaaa 439
Query: 241 tgtatatattttattccatatcaagcatattaaaatcaagtataaatttataaggctaaa 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtatatatctcattccatatcaagcatattaaaatcaagtataaatttataaggctaaa 499
Query: 301 ttagcaaaatcatatatatctagctttctttttagttttaaatgtaattttgaaaatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttagcaaaatcatatatatctagctttctttttagttttaaatgtaattttgaaaatata 559
Query: 361 tgtaagttcaaatatgattccctatttctctttccttcctctaaccaccctcatatctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtaagttcaaatatgattccctatttctctttccttcctctaaccaccctcatatctgg 619
Query: 421 ctcaa-gtaatgtcttattttactttcattattatatggagagagagagagagagagaga 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcaaagtaatgtcttattttactttcattattatatggagagagagagagagagagaga 679
Query: 480 gagagagagagagagagagagagagag 506
||||||||||||| |||||||||||||
Sbjct: 680 gagagagagagagtgagagagagagag 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_f11.g1 MSMg01no478_f11.g1 CHROMAT_FILE:
MSMg01no478_f11.g1 PHD_FILE: MSMg01no478_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:03 2005
(650 letters)
>mm_chr3_73924876_73925925
Length = 1050
Score = 948 bits (490), Expect = 0.0
Identities = 507/514 (98%), Gaps = 3/514 (0%)
Strand = Plus / Minus
Query: 1 cttaattttccaataagtctgaaaatcaatttcagttaagctaaatattagtatacatac 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 514 cttaattttccaataagtctgaaaatcaatttaagtttagctaaatattagtatacatac 455
Query: 61 ccaaaatagaaatttgagaatgtgttcattttctgtatttgactctcagttgcatcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccaaaatagaaatttgagaatgtgttcattttctgtatttgactctcagttgcatcaaag 395
Query: 121 ttacatggaaatagaggatataaatctaatgcaaatacattttaggattttgattgcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttacatggaaatagaggatataaatctaatgcaaatacattttaggattttgattgcttt 335
Query: 181 ttgttcgtcttaggatgactactttttcaggattttaaaagttttagttaccttaattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttgttcgtcttaggatgactactttttcaggattttaaaagttttagttaccttaattat 275
Query: 241 tatgccaaggtgataaggacaataaaggagaataatggagcactttaatatatatgtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatgccaaggtgataaggacaataaaggagaataatggagcactttaatatatatgtgca 215
Query: 301 tacatttatacttcaaaataaaaataaagttatattaatatacaatattttatagtgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tacatttatacttcaaaataaaaataaagttatattaatatacaatattttatagtgtat 155
Query: 361 tatacactatgtaaaatatgcattttatgtaaaatatactagttcatatttgatatataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tatacactatgtaaaatatgcattttatgtaaaatatactagttcatatttgatatataa 95
Query: 421 gtaactt---aaaatccaatagtacaagttgtaaatattttatcatttttatgcaaatag 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gtaacttttaaaaatccaatagtacaagttgtaaatattttatcatttttatgcaaatag 35
Query: 478 gaaataaccttcagtacctaaacagaataaggca 511
||||| ||||||||||||||||| ||||||||||
Sbjct: 34 gaaatgaccttcagtacctaaaccgaataaggca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
