BAC Information

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BAC

Clone NameMSMg01-478M17
Chromosome3 (Build37)
Map Location 119,456,591 - 119,673,682
singlet/doubletdoublet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M17.T7 (MSMg01no478_m17.b1)MSMg01-478M17.TJ (MSMg01no478_m17.g1)
ACCAG559826AG559827
length741743
length of high quality
(start - end)		394 (315 - 708)670 (62 - 731)
definitionCHROMAT_FILE: MSMg01no478_m17.b1 PHD_FILE: MSMg01no478_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:35 2005CHROMAT_FILE: MSMg01no478_m17.g1 PHD_FILE: MSMg01no478_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,456,591 - 119,456,984)(119,673,182 - 119,673,682)
sequence
CGGCCGCTAAANGACTCACTATTCAAAAACGGGCCGCGGAATTCTTTGTT
TACAAAAAAGAGACAGCAGGCTCCCCTCAGCCAAAAGAGATATATCCCAA
AGCCCCCACTCACATGGATAAACAGCTAGAATCAAGCTCTATTGAAGATT
TTTTTCTATATGTTACATGCATATGGTAAGGCTTAAACAGGACACAGGAC
CTTACTAAGAATAAATAATAAAACAAAACAACACAATGAATTAGAAGTAT
ATACTTTTGGATCATTACATTAGACCAGTAGTGTTCATTTCAATAAATAA
ATATGTCNTTANTACAAAGTTCCATCAAAAAGAAAAACACTGTGTAATTA
TGGATGCCTATAGATTATTTCATACATAACTGAAAGCCATCTCTACATCT
ATCAGTTGGTCATAATGTACTAGATACTCAAGTGTACTTGTTAAGACTTC
AAGTAATATGAAAAATCCTTATACATGTTAATATATTCATGGTTACATTT
TAAAGATTAAATACTCTATAAAAGTAAAATATTTTATGATTCTATGTTAA
AGTCAGAGGACAGCTTGCCAGAGTCATGTTTTCCTACCATGTGTGCCCCA
GCAATCAAGTGCAGGTCATTAGGCTTGGCAGCCAATGCCTTTACCTGCTG
AGCCACCCAGGAGGCCCACAAGTCTTGTTGCACACCATTTATCATATATT
ACTCAGTCCTAAGGCACTTTAAGTACAGTTTCTACTTTAAA

GGAGGCCTGGNGGCCGCCTGTTTCACAACATGAGGTGACCTATAGAATTC
CCGCGGAATTCACAGTGAACTTTGGGATATCACTCGCTGTTTATTTGAGC
TCATTTGTTTTCCTTGCTTTGTTTCTGTTCTTTGTATGCTTTAGTTTTAA
TTTTGGTAGATGAGACATGCTTAGAAATTCACCCACTTCTTGATTTTTAT
TTTGAGTTTAGGTTTCCAGGACATGCTCTGATCTCTTTTCTTGATTTTCT
TTTGTGTCTCTTGCAAAATCTCCCTTTTCATTTCTAATTTTATTAAGTTG
AATCTTCTGTTAGTTTTAGTTAATTGGACTGTCAATTTTATTTATTATTT
TCAGAAATCTTCTAATATGATTGATTCTTTGTGTTCTTCTTGTTTCCACC
TGATTAATTTCTACCATGATCGGTTTTTCTTTCTTTTCATTAACTTATTT
TAGATTTGGCTCTTCATTGTTTGTCTAAAACCTTCAGGTACATCAGTTAT
TTACTTGATATTTCTCTGATTTTTAAAAAAATATTATTAACTAAATTTAT
TCTTAGACAATTTCTCACACAGACATATGTACGGACCACCTTCACCCCTC
ACCGTCCTATTCCTCCTGTTTGTTCTGGTTAGAGTTTGTTTTACAAATTA
TCTTACTATGTATGATTGACTGGCCTAGAAATTGCTAGGTAGACCAGGCT
GGCCATGAACACACAGAGATCTACCTCTCGCTGCCTCCACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m17.b1 MSMg01no478_m17.b1 CHROMAT_FILE:
MSMg01no478_m17.b1 PHD_FILE: MSMg01no478_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:35 2005
         (394 letters)



>mm_chr3_119456391_119457184
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagttccatcaaaaagaaaaacactgtgtaattatggatgcctatagattatttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagttccatcaaaaagaaaaacactgtgtaattatggatgcctatagattatttcata 260

                                                                       
Query: 61  cataactgaaagccatctctacatctatcagttggtcataatgtactagatactcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataactgaaagccatctctacatctatcagttggtcataatgtactagatactcaagtg 320

                                                                       
Query: 121 tacttgttaagacttcaagtaatatgaaaaatccttatacatgttaatatattcatggtt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttgttaagacttcaagtaatataaaaaatccttatacatgttaatatattcatggtt 380

                                                                       
Query: 181 acattttaaagattaaatactctataaaagtaaaatattttatgattctatgttaaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattttaaagattaaatactctataaaagtaaaatattttatgattctatgttaaagtc 440

                                                                       
Query: 241 agaggacagcttgccagagtcatgttttcctaccatgtgtgccccagcaatcaagtgcag 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agaggacagcttgccagagtcatgttttcctaccatgtgtgtcccagcaatcaagtgcag 500

                                                                       
Query: 301 gtcattaggcttggcagccaatgcctttacctgctgagccacccaggaggcccacaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcattaggcttggcagccaatgcctttacctgctgagccacccaggaggcccacaagtc 560

                                             
Query: 361 ttgttgcacaccatttatcatatattactcagtc 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttgcacaccatttatcatatattactcagtc 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_m17.g1 MSMg01no478_m17.g1 CHROMAT_FILE:
MSMg01no478_m17.g1 PHD_FILE: MSMg01no478_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:35 2005
         (670 letters)



>mm_chr3_119672613_119673682
          Length = 1070

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                        
Query: 170  atctcttttcttgattttcttttgtgtctcttgcaaaatctcccttttcatttctaattt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atctcttttcttgattttcttttgtgtctcttgcaaaatctcccttttcatttctaattt 1011

                                                                        
Query: 230  tattaagttgaatcttctgttagttttagttaattggactgtcaattttatttattattt 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tattaagttgaatcttctgttagttttagttaattggactgtcaattttatttattattt 951

                                                                        
Query: 290  tcagaaatcttctaatatgattgattctttgtgttcttcttgtttccacctgattaattt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  tcagaaatcttctaatatgattgattctttgtgttcttcttgtttccacctgattaattt 891

                                                                        
Query: 350  ctaccatgatcggtttttctttcttttcattaacttattttagatttggctcttcattgt 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  ctaccatgatcggtttttctttcttttcattaacttattttagatttggctcttcattgt 831

                                                                        
Query: 410  ttgtctaaaaccttcaggtacatcagttatttacttgatatttctctgatttttaaaaaa 469
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 830  ttgtctaaaaccttcaggtacatcagttatttacttgatagttctctgatttttaaaaaa 771

                                                                        
Query: 470  atattattaactaaatttattcttagacaatttctcacacagacatatgtacggaccacc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  atattattaactaaatttattcttagacaatttctcacacagacatatgtacggaccacc 711

                                                                        
Query: 530  ttcacccctcaccgtcctattcctcctgtttgttctggttagagtttgttttacaaatta 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ttcacccctcaccgtcctattcctcctgtttgttctggttagagtttgttttacaaatta 651

                                                                        
Query: 590  tcttactatgtatgattgactggcctagaaattgctaggtagaccaggctggccatgaac 649
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  tcttactacgtatgattgactggcctagaaattgctaggtagaccaggctggccatgaac 591

                                 
Query: 650  acacagagatctacctctcgc 670
            |||||||||||||||||||||
Sbjct: 590  acacagagatctacctctcgc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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