Query= MSMg01no479_e22.b1 MSMg01no479_e22.b1 CHROMAT_FILE:
MSMg01no479_e22.b1 PHD_FILE: MSMg01no479_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:15 2005
(595 letters)
>mm_chr3_29383132_29384125
Length = 994
Score = 710 bits (367), Expect = 0.0
Identities = 398/411 (96%), Gaps = 7/411 (1%)
Strand = Plus / Minus
Query: 5 gaattcacaaaaagtccc---aagagaaagaagggggtggggaaatcaatcaagcaagaa 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattcacaaaaag---caagaagagaaagaagggggtggggaaatcaatcaagcaagaa 351
Query: 62 aagaggtgttttttttttcctgacaaaccacttgaaaatatgaaagtgagtcagtatttg 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagaggtg-tttttttttcctgacaaaccacttgaaaatatgaaagtgagtcagtatttg 292
Query: 122 agtacgggtctcttccactgggaacaagtgttatccttgcaatggcttccacaactcctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agtacgggtctcttccactgggaacaagtgttatccttgcaatggcttccacaactcctt 232
Query: 182 tacatgttacatctctctctttttgttttattctcttttattagatattttcttcattta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tacatgttacatctctctctttttgttttattctcttttattagatattttcttcattta 172
Query: 242 catttcaaatgctattcccaaagccccttataccctccccctgccctgctccccaactct 301
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 171 catttcaaatgctattcccaaagccccttataccctccccctgccctgctctccaactcc 112
Query: 302 ccccactcctgattcctggacctggcattcccgtgtactggggcatatgatctttgcaag 361
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 111 ccccactcctaattcctggccctggcattcccgtgtactggggcatatgatctttgtaag 52
Query: 362 accaagagtctctcctcccattgatggccgacaaggccatcctctgctaca 412
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 51 accaagagtctctcctcccattgatggccgactaggccatcctctgctaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_e22.g1 MSMg01no479_e22.g1 CHROMAT_FILE:
MSMg01no479_e22.g1 PHD_FILE: MSMg01no479_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:15 2005
(317 letters)
>mm_chr3_29225719_29226435
Length = 717
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Plus
Query: 1 cattcaaaatttatagcagttagaataaagctcaaaacaaaccagtaacaaataagattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcaaaatttatagcagttagaataaagctcaaaacaaaccagtaacaaataagattg 260
Query: 61 attcttaaataagatggttatttactatgttttggggacttgagagaatagtcatctttt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttaaataagatggttattttctatgttttggggacttgagagaatagtcatctttt 320
Query: 121 gtgggcagttggaagagtatgatatatggactccatttgaatattattaattactgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggcagttggaagagtatgatatatggactccatttgaatattattaattactgaaat 380
Query: 181 agcaaacaagttgttaaaagaaaatgtcatgaataattccatggcataaaaagtgagatc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 381 agcaaacaagttgttaaaagaaaatgtcttgaataattccatggcataaaaagtgaggtc 440
Query: 241 atccaaaaatttcaacatcattatgttatcatttgtgatggtgtgtgtgtgtgtgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaaaaatttcaacatcattatgttatcatttgtgatggtgtgtgtgtgtgtgtgtgt 500
Query: 301 gtgtgtgtgtgtg 313
||||| |||||||
Sbjct: 501 gtgtgggtgtgtg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
