Query= MSMg01no479_g19.b1 MSMg01no479_g19.b1 CHROMAT_FILE:
MSMg01no479_g19.b1 PHD_FILE: MSMg01no479_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:25 2005
(579 letters)
>mm_chr3_72076050_72077028
Length = 979
Score = 930 bits (481), Expect = 0.0
Identities = 549/575 (95%), Gaps = 8/575 (1%)
Strand = Plus / Minus
Query: 5 gaattctatcactc--taccgaaaggggaaagattttcgtgagttcaagaccaggtttat 62
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 644 gaattctatcactcagaa--gaaaagggaaagattttcgtgagttcaagaccaggtttat 587
Query: 63 ctacagtagtaattccatgagttacatggtaaggccatgcatatacaacaataaaaccaa 122
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 586 ctacagtactaattccatgagttacatggtgagggcatgcatatacaacaataaaaccaa 527
Query: 123 ccaaaaaccaaaactgcaacaagcttaaaacaaaaaccatacagagacctcttaatggtg 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccaaaaaccaaaactgcaacacgcttaaaacaaaaaccatacagagacctcttaatggtg 467
Query: 183 ctattttacatgcttgataaaataacatgtgtgtaacaaaaatggtcagttttcaaccat 242
|||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||
Sbjct: 466 ctattttacatgcttgataaaatagcatgcgtgtaacaaaaatggtcaatttttaaccat 407
Query: 243 agttttaaaactagataaatatgatgatcaagttcaaaaacattcattacatttctatga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agttttaaaactagataaatatgatgatcaagttcaaaaacattcattacatttctatga 347
Query: 303 ccttggctataatttctcatttctcataattcaagtttgttatccatataaaattattaa 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccttagctataatttctcatttctcataattcaagtttgttatccatataaaattattaa 287
Query: 363 aaaaaaacacagtccaagcctcttcactggttgtatttaagtaatagaactgttacctta 422
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaaaaa----attccaagcctcttcactggttgtatttaagtaatagaactgttacctta 231
Query: 423 atatcccagttacttaaatgcacttacttttatcttcattaacagggtaaggtatgtata 482
||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||
Sbjct: 230 atatcccagttacttaaatgcacttacttttatcttccttaccaaggtaagatatgtata 171
Query: 483 ggtattactaaagaaattatggatctttgtttcaaaatgttaaagggaagaaatactaga 542
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 170 ggtattactaaagaaattatggatctatgtttcaaaatgttaaaggaaagaaatactaga 111
Query: 543 aggatcaatatttttaaaatctctctatttgtctt 577
|||||||||||||||||||||||||||||||||||
Sbjct: 110 aggatcaatatttttaaaatctctctatttgtctt 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_g19.g1 MSMg01no479_g19.g1 CHROMAT_FILE:
MSMg01no479_g19.g1 PHD_FILE: MSMg01no479_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:25 2005
(700 letters)
>mm_chr3_71923598_71924697
Length = 1100
Score = 1330 bits (688), Expect = 0.0
Identities = 697/700 (99%)
Strand = Plus / Plus
Query: 1 ttaaatgcaaaacatctggcacaagcagttttagttgtggctaatttcatgttttctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatgcaaaacatctggcacaagcagttttagttgtggctaatttcatgttttctggg 260
Query: 61 acagggatatatttgtcataacagcacaagcaactttggatgcaatgaagcttacctgag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acagggatatatttgtcataacagcacaagcatctttggatgcaatgaagcttacctgag 320
Query: 121 cactcagagtgtgcccaaagcaaccattattaacataaggatagagaatagttcactagc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactcagagtgtgcccaaagcagccattattaacataaggatagagaatagttcactagc 380
Query: 181 ttcttggctgataggccttcatttaagaaaactagggcatccagagaagtgtctaatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttggctgataggccttcatttaagaaaactagggcatccagagaagtgtctaatagt 440
Query: 241 tgtcaattgtgaagtacatgaagccattccctcaagatttcatcttgtttacagagagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcaattgtgaagtacatgaagccattccctcaagatttcatcttgtttacagagagaa 500
Query: 301 agacaatcaaatagagtactaacattaagtatttatcatcattattagctattttagtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaatcaaatagagtactaacattaagtatttatcatcattattagctattttagtgc 560
Query: 361 acttaacactgctttaagtcatcttttgcacctttccagagaatcagggaaagatggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttaacactgctttaagtcatcttttgcacctttccagagaatcagggaaagatggctt 620
Query: 421 ccactagtatgtctccacaatgagctgcaatgtatgtttgagagggagttagctatcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccactagtatgtctccacaatgagctgcaatgtatgtttgagagggagttagctatcatt 680
Query: 481 ttcctctttatagttagtatttcaaaattaacttgccaagtatccactactcagagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctctttatagttagtatttcaaaattaacttgccaagtatccactactcagagaaga 740
Query: 541 catgttagaagatgtatctcattatttttgaagcttagttgacttcttagtaactgtctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catgttagaagatgtatctcattatttttgaagcttagttgacttcttagtaactgtctt 800
Query: 601 cttcctcatcctcttctgtcttttttcttcatcttctacttcctcttcttcctcctcttc 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 cttcctcatcctcttctgtcttttttcctcatcttctacttcctcttcttcctcctcttc 860
Query: 661 ttttggaaattcttcacattctactttcccttttcctctt 700
||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttggaaattcttcacattctactttcccttttcctctt 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
